Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01065

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_01064 and MIT1002_01065 are separated by 207 nucleotidesMIT1002_01065 and MIT1002_01066 are separated by 144 nucleotidesMIT1002_01066 and MIT1002_01067 are separated by 15 nucleotides MIT1002_01064: MIT1002_01064 - hypothetical protein, at 1,174,849 to 1,176,039 _01064 MIT1002_01065: MIT1002_01065 - Transposase, at 1,176,247 to 1,176,462 _01065 MIT1002_01066: MIT1002_01066 - hypothetical protein, at 1,176,607 to 1,176,750 _01066 MIT1002_01067: MIT1002_01067 - putative transposase OrfB, at 1,176,766 to 1,177,296 _01067 Position (kb) 1176 1177Strain fitness (log2 ratio) -3 -2 -1 0 1at 1175.248 kb on + strand, within MIT1002_01064at 1175.301 kb on - strand, within MIT1002_01064at 1175.354 kb on + strand, within MIT1002_01064at 1175.365 kb on + strand, within MIT1002_01064at 1175.421 kb on + strand, within MIT1002_01064at 1175.436 kb on - strand, within MIT1002_01064at 1175.588 kb on - strand, within MIT1002_01064at 1175.597 kb on + strand, within MIT1002_01064at 1175.695 kb on + strand, within MIT1002_01064at 1175.695 kb on + strand, within MIT1002_01064at 1175.730 kb on - strand, within MIT1002_01064at 1175.734 kb on + strand, within MIT1002_01064at 1175.762 kb on + strand, within MIT1002_01064at 1175.826 kb on - strand, within MIT1002_01064at 1175.873 kb on + strand, within MIT1002_01064at 1176.107 kb on - strandat 1176.144 kb on + strandat 1176.171 kb on - strandat 1176.212 kb on + strandat 1176.219 kb on + strandat 1176.300 kb on - strand, within MIT1002_01065at 1176.416 kb on + strand, within MIT1002_01065at 1176.416 kb on + strand, within MIT1002_01065at 1176.424 kb on - strand, within MIT1002_01065at 1176.475 kb on + strandat 1176.631 kb on + strand, within MIT1002_01066at 1176.714 kb on + strand, within MIT1002_01066at 1176.736 kb on - strandat 1176.828 kb on - strand, within MIT1002_01067at 1176.828 kb on - strand, within MIT1002_01067at 1176.842 kb on + strand, within MIT1002_01067at 1176.850 kb on - strand, within MIT1002_01067at 1176.850 kb on - strand, within MIT1002_01067at 1176.892 kb on - strand, within MIT1002_01067at 1176.932 kb on + strand, within MIT1002_01067at 1176.940 kb on - strand, within MIT1002_01067at 1176.940 kb on - strand, within MIT1002_01067at 1176.942 kb on + strand, within MIT1002_01067at 1177.008 kb on - strand, within MIT1002_01067at 1177.056 kb on - strand, within MIT1002_01067at 1177.102 kb on + strand, within MIT1002_01067at 1177.142 kb on - strand, within MIT1002_01067at 1177.165 kb on + strand, within MIT1002_01067at 1177.173 kb on - strand, within MIT1002_01067at 1177.189 kb on + strand, within MIT1002_01067at 1177.197 kb on - strand, within MIT1002_01067at 1177.216 kb on + strand, within MIT1002_01067at 1177.216 kb on + strand, within MIT1002_01067at 1177.216 kb on + strand, within MIT1002_01067at 1177.224 kb on - strand, within MIT1002_01067at 1177.224 kb on - strand, within MIT1002_01067at 1177.224 kb on - strand, within MIT1002_01067at 1177.224 kb on - strand, within MIT1002_01067at 1177.226 kb on + strand, within MIT1002_01067at 1177.226 kb on + strand, within MIT1002_01067at 1177.230 kb on + strand, within MIT1002_01067at 1177.231 kb on + strand, within MIT1002_01067at 1177.231 kb on + strand, within MIT1002_01067at 1177.231 kb on + strand, within MIT1002_01067at 1177.359 kb on - strandat 1177.363 kb on + strandat 1177.424 kb on + strandat 1177.453 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
remove
1,175,248 + MIT1002_01064 0.34 +0.4
1,175,301 - MIT1002_01064 0.38 +0.4
1,175,354 + MIT1002_01064 0.42 -1.5
1,175,365 + MIT1002_01064 0.43 +0.1
1,175,421 + MIT1002_01064 0.48 -1.5
1,175,436 - MIT1002_01064 0.49 +0.3
1,175,588 - MIT1002_01064 0.62 +1.1
1,175,597 + MIT1002_01064 0.63 -0.5
1,175,695 + MIT1002_01064 0.71 -0.4
1,175,695 + MIT1002_01064 0.71 +0.1
1,175,730 - MIT1002_01064 0.74 +0.1
1,175,734 + MIT1002_01064 0.74 +0.1
1,175,762 + MIT1002_01064 0.77 -1.0
1,175,826 - MIT1002_01064 0.82 -1.0
1,175,873 + MIT1002_01064 0.86 +1.1
1,176,107 - +1.2
1,176,144 + -0.6
1,176,171 - +1.4
1,176,212 + -1.9
1,176,219 + -0.4
1,176,300 - MIT1002_01065 0.25 +1.2
1,176,416 + MIT1002_01065 0.78 -1.7
1,176,416 + MIT1002_01065 0.78 +1.6
1,176,424 - MIT1002_01065 0.82 +0.4
1,176,475 + -0.3
1,176,631 + MIT1002_01066 0.17 -1.0
1,176,714 + MIT1002_01066 0.74 -1.1
1,176,736 - +0.7
1,176,828 - MIT1002_01067 0.12 +0.3
1,176,828 - MIT1002_01067 0.12 -0.1
1,176,842 + MIT1002_01067 0.14 -1.9
1,176,850 - MIT1002_01067 0.16 -3.5
1,176,850 - MIT1002_01067 0.16 -0.1
1,176,892 - MIT1002_01067 0.24 -2.3
1,176,932 + MIT1002_01067 0.31 -1.0
1,176,940 - MIT1002_01067 0.33 -2.0
1,176,940 - MIT1002_01067 0.33 -1.2
1,176,942 + MIT1002_01067 0.33 -0.4
1,177,008 - MIT1002_01067 0.46 -0.8
1,177,056 - MIT1002_01067 0.55 -0.7
1,177,102 + MIT1002_01067 0.63 +1.3
1,177,142 - MIT1002_01067 0.71 -0.3
1,177,165 + MIT1002_01067 0.75 +0.7
1,177,173 - MIT1002_01067 0.77 +0.9
1,177,189 + MIT1002_01067 0.80 -0.3
1,177,197 - MIT1002_01067 0.81 +0.8
1,177,216 + MIT1002_01067 0.85 +0.3
1,177,216 + MIT1002_01067 0.85 -0.3
1,177,216 + MIT1002_01067 0.85 +0.2
1,177,224 - MIT1002_01067 0.86 -0.0
1,177,224 - MIT1002_01067 0.86 +1.0
1,177,224 - MIT1002_01067 0.86 +1.3
1,177,224 - MIT1002_01067 0.86 -0.9
1,177,226 + MIT1002_01067 0.87 -0.2
1,177,226 + MIT1002_01067 0.87 +0.4
1,177,230 + MIT1002_01067 0.87 +0.7
1,177,231 + MIT1002_01067 0.88 +1.2
1,177,231 + MIT1002_01067 0.88 +1.6
1,177,231 + MIT1002_01067 0.88 +0.8
1,177,359 - -0.4
1,177,363 + +0.4
1,177,424 + +1.1
1,177,453 + -0.4

Or see this region's nucleotide sequence