Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00984

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
1,090,187	-		MIT1002_00983	0.31	-0.6
1,090,233	-		MIT1002_00983	0.36	+0.1
1,090,256	-		MIT1002_00983	0.38	+0.6
1,090,498	+		MIT1002_00983	0.62	-1.1
1,090,512	-		MIT1002_00983	0.63	+0.8
1,090,594	+		MIT1002_00983	0.72	-0.2
1,090,605	+		MIT1002_00983	0.73	+0.1
1,090,624	+		MIT1002_00983	0.75	-0.5
1,090,624	+		MIT1002_00983	0.75	-0.7
1,090,713	-		MIT1002_00983	0.83	+0.2
1,090,745	-		MIT1002_00983	0.87	-0.2
1,090,842	-				-2.9
1,090,882	+				-0.6
1,090,928	-				+0.5
1,091,008	-				+1.1
1,091,010	+				+1.8
1,091,048	+				+0.4
1,091,128	+				+1.3
1,091,128	+				-0.6
1,091,128	+				+1.8
1,091,128	+				+0.5
1,091,136	-				-0.0
1,091,183	+				+0.6
1,091,263	-				-0.7
1,091,263	-				+0.1
1,091,278	+		MIT1002_00984	0.10	+2.3
1,091,296	-		MIT1002_00984	0.12	-0.1
1,091,341	+		MIT1002_00984	0.14	-0.3
1,091,349	-		MIT1002_00984	0.15	+0.4
1,091,368	-		MIT1002_00984	0.16	+0.8
1,091,388	+		MIT1002_00984	0.17	+0.7
1,091,396	-		MIT1002_00984	0.18	-1.2
1,091,405	-		MIT1002_00984	0.18	+0.9
1,091,471	-		MIT1002_00984	0.22	-1.2
1,091,495	-		MIT1002_00984	0.24	+0.3
1,091,495	-		MIT1002_00984	0.24	-0.3
1,091,495	-		MIT1002_00984	0.24	-1.9
1,091,536	-		MIT1002_00984	0.26	+0.7
1,091,577	-		MIT1002_00984	0.29	+0.7
1,091,713	+		MIT1002_00984	0.37	-0.5
1,091,735	-		MIT1002_00984	0.39	+1.3
1,091,735	-		MIT1002_00984	0.39	+0.8
1,091,756	+		MIT1002_00984	0.40	-1.2
1,091,756	-		MIT1002_00984	0.40	-0.6
1,091,766	+		MIT1002_00984	0.41	-0.3
1,091,790	+		MIT1002_00984	0.42	-0.1
1,091,887	-		MIT1002_00984	0.48	-2.5
1,091,950	+		MIT1002_00984	0.52	+1.8
1,091,950	+		MIT1002_00984	0.52	+0.4
1,091,967	+		MIT1002_00984	0.53	-2.3
1,091,967	+		MIT1002_00984	0.53	+1.4
1,092,084	+		MIT1002_00984	0.60	-0.0
1,092,134	-		MIT1002_00984	0.64	-0.9
1,092,134	-		MIT1002_00984	0.64	+0.8
1,092,144	-		MIT1002_00984	0.64	-0.7
1,092,144	-		MIT1002_00984	0.64	-0.4
1,092,144	-		MIT1002_00984	0.64	+1.6
1,092,146	+		MIT1002_00984	0.64	+0.1
1,092,146	+		MIT1002_00984	0.64	+0.7
1,092,154	-		MIT1002_00984	0.65	+0.0
1,092,154	-		MIT1002_00984	0.65	+2.1
1,092,154	-		MIT1002_00984	0.65	+1.1
1,092,157	+		MIT1002_00984	0.65	+0.9
1,092,177	+		MIT1002_00984	0.66	-1.6
1,092,191	+		MIT1002_00984	0.67	+0.4
1,092,192	-		MIT1002_00984	0.67	+0.5
1,092,273	+		MIT1002_00984	0.72	-0.8
1,092,288	-		MIT1002_00984	0.73	-0.3
1,092,443	+		MIT1002_00984	0.83	-0.6
1,092,500	+		MIT1002_00984	0.86	+1.2
1,092,500	+		MIT1002_00984	0.86	+1.0
1,092,601	-				-0.7
1,092,601	-				+0.5
1,092,601	-				-0.8
1,092,728	-				-0.8
1,092,759	-				+1.8
1,092,815	-		MIT1002_00985	0.22	+0.7
1,092,821	+		MIT1002_00985	0.24	-0.2
1,092,917	-		MIT1002_00985	0.49	-0.3
1,092,938	+		MIT1002_00985	0.55	+1.6
1,092,954	-		MIT1002_00985	0.59	-1.1
1,092,976	+		MIT1002_00985	0.65	+0.3
1,092,992	+		MIT1002_00985	0.69	+1.1
1,093,207	+				+2.4
1,093,215	-				-1.2
1,093,215	-				-0.5
1,093,225	-				-2.6
1,093,333	-				-0.8
1,093,354	-				+0.1
1,093,381	+				-3.1
1,093,466	-		MIT1002_00986	0.12	-2.2
1,093,468	-		MIT1002_00986	0.12	-0.2
1,093,472	+		MIT1002_00986	0.12	+1.1
1,093,472	+		MIT1002_00986	0.12	+0.0
1,093,472	+		MIT1002_00986	0.12	+0.9
1,093,480	-		MIT1002_00986	0.13	+0.3
1,093,480	-		MIT1002_00986	0.13	+0.7
1,093,527	+		MIT1002_00986	0.16	-3.9
1,093,641	-		MIT1002_00986	0.25	+0.6
1,093,655	+		MIT1002_00986	0.26	-0.1
1,093,655	+		MIT1002_00986	0.26	-2.7
1,093,655	+		MIT1002_00986	0.26	+0.6
1,093,663	-		MIT1002_00986	0.26	+0.2
1,093,663	-		MIT1002_00986	0.26	-0.2
1,093,663	-		MIT1002_00986	0.26	-0.1
1,093,663	-		MIT1002_00986	0.26	+1.6
1,093,663	-		MIT1002_00986	0.26	-0.7
1,093,686	+		MIT1002_00986	0.28	-0.7
1,093,717	+		MIT1002_00986	0.30	+0.3