Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00920

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
1,018,768	-				-0.5
1,018,859	-		MIT1002_00919	0.16	+0.4
1,018,884	+		MIT1002_00919	0.18	+0.7
1,018,912	+		MIT1002_00919	0.21	-1.2
1,018,948	+		MIT1002_00919	0.24	+1.5
1,018,948	+		MIT1002_00919	0.24	-0.1
1,018,948	+		MIT1002_00919	0.24	-0.9
1,018,955	+		MIT1002_00919	0.25	+0.6
1,018,956	-		MIT1002_00919	0.25	+1.3
1,018,956	-		MIT1002_00919	0.25	-1.1
1,018,956	-		MIT1002_00919	0.25	+0.5
1,018,963	-		MIT1002_00919	0.26	-1.6
1,019,061	-		MIT1002_00919	0.35	+0.7
1,019,061	-		MIT1002_00919	0.35	+1.1
1,019,080	+		MIT1002_00919	0.37	+1.4
1,019,094	+		MIT1002_00919	0.38	+0.3
1,019,149	-		MIT1002_00919	0.43	-0.2
1,019,197	-		MIT1002_00919	0.48	+1.0
1,019,197	-		MIT1002_00919	0.48	-1.3
1,019,198	+		MIT1002_00919	0.48	+2.2
1,019,256	+		MIT1002_00919	0.53	-1.0
1,019,261	+		MIT1002_00919	0.54	+0.3
1,019,345	+		MIT1002_00919	0.62	-2.6
1,019,345	+		MIT1002_00919	0.62	+1.5
1,019,353	-		MIT1002_00919	0.63	-1.5
1,019,353	-		MIT1002_00919	0.63	-2.0
1,019,353	-		MIT1002_00919	0.63	-1.4
1,019,353	-		MIT1002_00919	0.63	+0.7
1,019,360	+		MIT1002_00919	0.63	+1.3
1,019,387	+		MIT1002_00919	0.66	+3.7
1,019,399	-		MIT1002_00919	0.67	-0.7
1,019,437	+		MIT1002_00919	0.71	+1.2
1,019,445	-		MIT1002_00919	0.71	+0.4
1,019,448	+		MIT1002_00919	0.72	-0.3
1,019,570	-		MIT1002_00919	0.83	+0.6
1,019,610	+		MIT1002_00919	0.87	-3.1
1,019,669	+				+0.9
1,019,688	+				+0.8
1,019,692	-				+1.0
1,019,727	+				+1.0
1,019,803	-				+1.0
1,019,818	-				+1.5
1,019,873	+				+0.4
1,019,876	-				+1.2
1,019,881	-				-0.1
1,020,006	-				+1.4
1,020,093	-		MIT1002_00920	0.13	-0.7
1,020,104	+		MIT1002_00920	0.13	+0.4
1,020,190	+		MIT1002_00920	0.16	-0.2
1,020,190	+		MIT1002_00920	0.16	+1.3
1,020,240	+		MIT1002_00920	0.18	+1.6
1,020,240	+		MIT1002_00920	0.18	-0.1
1,020,245	+		MIT1002_00920	0.18	-0.5
1,020,245	+		MIT1002_00920	0.18	+0.0
1,020,250	+		MIT1002_00920	0.18	+1.0
1,020,259	-		MIT1002_00920	0.19	-1.4
1,020,340	+		MIT1002_00920	0.22	-0.9
1,020,363	-		MIT1002_00920	0.23	+0.7
1,020,491	+		MIT1002_00920	0.27	+0.6
1,020,506	+		MIT1002_00920	0.28	-0.9
1,020,506	+		MIT1002_00920	0.28	-1.4
1,020,535	+		MIT1002_00920	0.29	-0.6
1,020,535	-		MIT1002_00920	0.29	+1.5
1,020,669	+		MIT1002_00920	0.34	+0.0
1,020,710	+		MIT1002_00920	0.35	+0.8
1,020,740	-		MIT1002_00920	0.36	-0.3
1,020,778	+		MIT1002_00920	0.38	+1.6
1,020,778	+		MIT1002_00920	0.38	-0.5
1,020,814	-		MIT1002_00920	0.39	+0.3
1,020,838	-		MIT1002_00920	0.40	+2.4
1,020,867	-		MIT1002_00920	0.41	+2.8
1,020,889	+		MIT1002_00920	0.42	-0.4
1,020,922	+		MIT1002_00920	0.43	+1.7
1,020,935	-		MIT1002_00920	0.44	-0.3
1,020,956	+		MIT1002_00920	0.44	+1.4
1,020,972	+		MIT1002_00920	0.45	-1.1
1,020,988	+		MIT1002_00920	0.45	+1.1
1,020,991	-		MIT1002_00920	0.46	+1.0
1,021,006	-		MIT1002_00920	0.46	+0.6
1,021,023	+		MIT1002_00920	0.47	+0.1
1,021,135	+		MIT1002_00920	0.51	+0.4
1,021,187	+		MIT1002_00920	0.53	-0.0
1,021,202	+		MIT1002_00920	0.53	-2.2
1,021,297	+		MIT1002_00920	0.57	-2.7
1,021,379	+		MIT1002_00920	0.60	+0.3
1,021,397	+		MIT1002_00920	0.60	+0.1
1,021,405	-		MIT1002_00920	0.61	-0.9
1,021,405	-		MIT1002_00920	0.61	+0.3
1,021,405	-		MIT1002_00920	0.61	+1.8
1,021,405	-		MIT1002_00920	0.61	+0.1
1,021,405	-		MIT1002_00920	0.61	-0.4
1,021,405	-		MIT1002_00920	0.61	+1.6
1,021,456	-		MIT1002_00920	0.63	+1.9
1,021,461	-		MIT1002_00920	0.63	+1.0
1,021,498	+		MIT1002_00920	0.64	-1.1
1,021,506	-		MIT1002_00920	0.64	-0.6
1,021,515	+		MIT1002_00920	0.65	-0.1
1,021,541	+		MIT1002_00920	0.66	+1.7
1,021,736	-		MIT1002_00920	0.73	+0.4
1,021,742	-		MIT1002_00920	0.73	+1.6
1,021,753	+		MIT1002_00920	0.73	+0.5
1,021,758	+		MIT1002_00920	0.74	-1.2
1,021,761	-		MIT1002_00920	0.74	-0.2
1,021,761	-		MIT1002_00920	0.74	-0.4
1,021,761	-		MIT1002_00920	0.74	+0.8
1,021,761	-		MIT1002_00920	0.74	+0.8
1,021,771	-		MIT1002_00920	0.74	+0.8
1,021,772	+		MIT1002_00920	0.74	-0.3
1,021,817	-		MIT1002_00920	0.76	+0.4
1,021,865	+		MIT1002_00920	0.78	-0.6
1,021,865	+		MIT1002_00920	0.78	+2.8
1,021,870	+		MIT1002_00920	0.78	+1.0
1,021,873	-		MIT1002_00920	0.78	+0.2
1,021,873	-		MIT1002_00920	0.78	-2.3
1,021,873	-		MIT1002_00920	0.78	-1.1
1,021,889	+		MIT1002_00920	0.78	-1.9
1,022,011	+		MIT1002_00920	0.83	-0.2
1,022,131	+		MIT1002_00920	0.87	+0.0
1,022,243	+				+0.0
1,022,254	+				+0.5
1,022,254	+				-0.9
1,022,254	+				-2.1
1,022,292	+				-2.6
1,022,374	+				-0.4
1,022,374	+				-0.0
1,022,416	+				-0.3
1,022,458	-				+0.3
1,022,472	+				-0.3
1,022,480	-				+0.9
1,022,495	+				-1.9
1,022,563	+				+0.5
1,022,583	+				-0.3
1,022,583	+				+1.2
1,022,591	-				-0.2
1,022,591	-				+0.6
1,022,617	+		MIT1002_00921	0.12	-2.3
1,022,684	+		MIT1002_00921	0.18	+0.8
1,022,716	-		MIT1002_00921	0.21	-2.7
1,022,743	+		MIT1002_00921	0.23	+0.6
1,022,773	-		MIT1002_00921	0.26	-4.0
1,022,827	+		MIT1002_00921	0.31	+0.1
1,022,872	+		MIT1002_00921	0.35	+2.8
1,022,900	+		MIT1002_00921	0.37	-2.0
1,022,943	+		MIT1002_00921	0.41	+0.8
1,023,004	-		MIT1002_00921	0.47	+1.2
1,023,013	+		MIT1002_00921	0.47	+1.0
1,023,024	+		MIT1002_00921	0.48	+1.6
1,023,032	-		MIT1002_00921	0.49	-0.4
1,023,075	-		MIT1002_00921	0.53	+0.0
1,023,100	-		MIT1002_00921	0.55	+1.1
1,023,103	-		MIT1002_00921	0.55	-0.3
1,023,142	-		MIT1002_00921	0.59	-0.4
1,023,152	-		MIT1002_00921	0.60	+0.3
1,023,179	-		MIT1002_00921	0.62	-0.9
1,023,314	+		MIT1002_00921	0.74	+0.6
1,023,324	+		MIT1002_00921	0.75	-1.2
1,023,367	+		MIT1002_00921	0.79	+0.1
1,023,375	+		MIT1002_00921	0.80	-1.4
1,023,389	+		MIT1002_00921	0.81	+1.5
1,023,395	+		MIT1002_00921	0.81	+0.1
1,023,403	-		MIT1002_00921	0.82	-0.4
1,023,408	-		MIT1002_00921	0.83	+1.1
1,023,416	+		MIT1002_00921	0.83	+0.6
1,023,424	-		MIT1002_00921	0.84	+1.3