Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00845 and MIT1002_00846 are separated by 211 nucleotides MIT1002_00846 and MIT1002_00847 are separated by 42 nucleotides MIT1002_00847 and MIT1002_00848 are separated by 239 nucleotides MIT1002_00848 and MIT1002_00849 are separated by 85 nucleotides
MIT1002_00845: MIT1002_00845 - putative transcriptional regulatory protein YeeN, at 926,394 to 927,116
_00845
MIT1002_00846: MIT1002_00846 - Major NAD(P)H-flavin oxidoreductase, at 927,328 to 927,984
_00846
MIT1002_00847: MIT1002_00847 - hypothetical protein, at 928,027 to 928,302
_00847
MIT1002_00848: MIT1002_00848 - hypothetical protein, at 928,542 to 928,868
_00848
MIT1002_00849: MIT1002_00849 - bifunctional preprotein translocase subunit SecD/SecF, at 928,954 to 931,521
_00849
Position (kb) 928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 927.078 kb on - strand at 927.092 kb on + strand at 927.158 kb on - strand at 927.360 kb on + strand at 927.381 kb on - strand at 927.429 kb on + strand, within MIT1002_00846 at 927.466 kb on - strand, within MIT1002_00846 at 927.466 kb on - strand, within MIT1002_00846 at 927.484 kb on + strand, within MIT1002_00846 at 927.515 kb on - strand, within MIT1002_00846 at 927.515 kb on - strand, within MIT1002_00846 at 927.528 kb on - strand, within MIT1002_00846 at 927.557 kb on - strand, within MIT1002_00846 at 927.678 kb on + strand, within MIT1002_00846 at 927.678 kb on + strand, within MIT1002_00846 at 927.713 kb on - strand, within MIT1002_00846 at 927.744 kb on - strand, within MIT1002_00846 at 927.749 kb on - strand, within MIT1002_00846 at 927.753 kb on + strand, within MIT1002_00846 at 927.763 kb on + strand, within MIT1002_00846 at 927.801 kb on - strand, within MIT1002_00846 at 927.801 kb on - strand, within MIT1002_00846 at 927.852 kb on + strand, within MIT1002_00846 at 927.852 kb on + strand, within MIT1002_00846 at 927.852 kb on + strand, within MIT1002_00846 at 927.852 kb on + strand, within MIT1002_00846 at 927.860 kb on - strand, within MIT1002_00846 at 927.862 kb on + strand, within MIT1002_00846 at 927.906 kb on + strand, within MIT1002_00846 at 927.979 kb on + strand at 928.017 kb on - strand at 928.020 kb on + strand at 928.088 kb on + strand, within MIT1002_00847 at 928.184 kb on + strand, within MIT1002_00847 at 928.192 kb on - strand, within MIT1002_00847 at 928.192 kb on - strand, within MIT1002_00847 at 928.195 kb on - strand, within MIT1002_00847 at 928.312 kb on + strand at 928.326 kb on - strand at 928.419 kb on + strand at 928.443 kb on - strand at 928.451 kb on - strand at 928.451 kb on - strand at 928.453 kb on - strand at 928.569 kb on - strand at 928.626 kb on - strand, within MIT1002_00848 at 928.629 kb on + strand, within MIT1002_00848 at 928.637 kb on - strand, within MIT1002_00848 at 928.637 kb on - strand, within MIT1002_00848 at 928.645 kb on - strand, within MIT1002_00848 at 928.670 kb on + strand, within MIT1002_00848 at 928.729 kb on + strand, within MIT1002_00848 at 928.784 kb on + strand, within MIT1002_00848 at 928.784 kb on + strand, within MIT1002_00848 at 928.784 kb on + strand, within MIT1002_00848 at 928.792 kb on - strand, within MIT1002_00848 at 928.801 kb on + strand, within MIT1002_00848 at 928.803 kb on + strand, within MIT1002_00848 at 928.803 kb on + strand, within MIT1002_00848 at 928.804 kb on - strand, within MIT1002_00848 at 928.818 kb on + strand, within MIT1002_00848 at 928.846 kb on + strand at 928.858 kb on - strand at 928.859 kb on - strand at 928.860 kb on - strand at 929.060 kb on - strand at 929.072 kb on - strand at 929.083 kb on - strand at 929.093 kb on - strand at 929.111 kb on + strand at 929.201 kb on + strand at 929.209 kb on - strand at 929.209 kb on - strand at 929.270 kb on + strand, within MIT1002_00849 at 929.280 kb on + strand, within MIT1002_00849 at 929.293 kb on - strand, within MIT1002_00849 at 929.293 kb on - strand, within MIT1002_00849
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3 remove 927,078 - -1.0 927,092 + -0.9 927,158 - -2.0 927,360 + -0.4 927,381 - +0.3 927,429 + MIT1002_00846 0.15 -2.1 927,466 - MIT1002_00846 0.21 +0.1 927,466 - MIT1002_00846 0.21 -0.4 927,484 + MIT1002_00846 0.24 +1.2 927,515 - MIT1002_00846 0.28 +0.9 927,515 - MIT1002_00846 0.28 +1.4 927,528 - MIT1002_00846 0.30 -1.4 927,557 - MIT1002_00846 0.35 +0.9 927,678 + MIT1002_00846 0.53 -0.4 927,678 + MIT1002_00846 0.53 -0.7 927,713 - MIT1002_00846 0.59 -1.3 927,744 - MIT1002_00846 0.63 +0.4 927,749 - MIT1002_00846 0.64 +1.3 927,753 + MIT1002_00846 0.65 +0.8 927,763 + MIT1002_00846 0.66 +1.8 927,801 - MIT1002_00846 0.72 -2.3 927,801 - MIT1002_00846 0.72 -3.2 927,852 + MIT1002_00846 0.80 -1.0 927,852 + MIT1002_00846 0.80 +0.3 927,852 + MIT1002_00846 0.80 +1.5 927,852 + MIT1002_00846 0.80 +0.6 927,860 - MIT1002_00846 0.81 -0.0 927,862 + MIT1002_00846 0.81 -0.6 927,906 + MIT1002_00846 0.88 -0.3 927,979 + -0.3 928,017 - -1.7 928,020 + -0.5 928,088 + MIT1002_00847 0.22 -2.2 928,184 + MIT1002_00847 0.57 -1.0 928,192 - MIT1002_00847 0.60 -2.2 928,192 - MIT1002_00847 0.60 -0.5 928,195 - MIT1002_00847 0.61 -0.7 928,312 + +0.8 928,326 - -1.3 928,419 + +1.1 928,443 - +1.1 928,451 - +0.3 928,451 - -3.5 928,453 - +0.3 928,569 - -0.8 928,626 - MIT1002_00848 0.26 -0.6 928,629 + MIT1002_00848 0.27 +0.2 928,637 - MIT1002_00848 0.29 -2.4 928,637 - MIT1002_00848 0.29 +0.2 928,645 - MIT1002_00848 0.31 +0.1 928,670 + MIT1002_00848 0.39 -0.2 928,729 + MIT1002_00848 0.57 +0.1 928,784 + MIT1002_00848 0.74 -2.1 928,784 + MIT1002_00848 0.74 +0.5 928,784 + MIT1002_00848 0.74 +0.2 928,792 - MIT1002_00848 0.76 -0.7 928,801 + MIT1002_00848 0.79 +0.7 928,803 + MIT1002_00848 0.80 +0.4 928,803 + MIT1002_00848 0.80 +1.1 928,804 - MIT1002_00848 0.80 -0.3 928,818 + MIT1002_00848 0.84 +0.6 928,846 + +0.7 928,858 - +0.1 928,859 - +0.1 928,860 - -0.1 929,060 - -0.3 929,072 - +0.5 929,083 - -2.3 929,093 - -0.9 929,111 + +0.2 929,201 + +1.4 929,209 - +0.1 929,209 - -1.7 929,270 + MIT1002_00849 0.12 -0.3 929,280 + MIT1002_00849 0.13 +1.4 929,293 - MIT1002_00849 0.13 -1.9 929,293 - MIT1002_00849 0.13 +1.2
Or see this region's nucleotide sequence