Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00751 and MIT1002_00752 are separated by 100 nucleotides MIT1002_00752 and MIT1002_00753 are separated by 16 nucleotides
MIT1002_00751: MIT1002_00751 - Phosphate regulon transcriptional regulatory protein PhoB, at 824,137 to 824,826
_00751
MIT1002_00752: MIT1002_00752 - Phosphate regulon sensor protein PhoR, at 824,927 to 826,228
_00752
MIT1002_00753: MIT1002_00753 - Phosphate-binding protein PstS 1 precursor, at 826,245 to 827,276
_00753
Position (kb) 824
825
826
827 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 823.967 kb on + strand at 824.147 kb on - strand at 824.149 kb on - strand at 824.286 kb on - strand, within MIT1002_00751 at 824.326 kb on - strand, within MIT1002_00751 at 824.326 kb on - strand, within MIT1002_00751 at 824.336 kb on + strand, within MIT1002_00751 at 824.660 kb on + strand, within MIT1002_00751 at 824.850 kb on + strand at 824.862 kb on + strand at 824.906 kb on - strand at 824.957 kb on + strand at 824.969 kb on + strand at 824.969 kb on + strand at 824.969 kb on + strand at 824.969 kb on + strand at 824.969 kb on + strand at 824.977 kb on - strand at 824.977 kb on - strand at 825.039 kb on + strand at 825.039 kb on + strand at 825.113 kb on - strand, within MIT1002_00752 at 825.176 kb on - strand, within MIT1002_00752 at 825.234 kb on + strand, within MIT1002_00752 at 825.235 kb on + strand, within MIT1002_00752 at 825.928 kb on + strand, within MIT1002_00752 at 825.936 kb on - strand, within MIT1002_00752 at 825.936 kb on - strand, within MIT1002_00752 at 826.014 kb on + strand, within MIT1002_00752 at 826.022 kb on - strand, within MIT1002_00752 at 826.106 kb on - strand at 826.223 kb on + strand at 826.223 kb on + strand at 826.230 kb on - strand at 826.230 kb on - strand at 826.245 kb on + strand at 826.286 kb on - strand at 826.325 kb on - strand at 826.325 kb on - strand at 826.325 kb on - strand at 826.531 kb on + strand, within MIT1002_00753 at 826.588 kb on - strand, within MIT1002_00753 at 826.634 kb on + strand, within MIT1002_00753 at 826.642 kb on - strand, within MIT1002_00753 at 826.731 kb on - strand, within MIT1002_00753 at 826.731 kb on - strand, within MIT1002_00753 at 826.787 kb on - strand, within MIT1002_00753 at 826.812 kb on - strand, within MIT1002_00753 at 826.844 kb on - strand, within MIT1002_00753 at 827.027 kb on + strand, within MIT1002_00753 at 827.027 kb on + strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.058 kb on - strand, within MIT1002_00753 at 827.141 kb on + strand, within MIT1002_00753 at 827.141 kb on + strand, within MIT1002_00753 at 827.149 kb on - strand, within MIT1002_00753 at 827.149 kb on - strand, within MIT1002_00753
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3 remove 823,967 + -0.5 824,147 - -0.9 824,149 - -0.9 824,286 - MIT1002_00751 0.22 -0.6 824,326 - MIT1002_00751 0.27 -2.0 824,326 - MIT1002_00751 0.27 -1.2 824,336 + MIT1002_00751 0.29 -2.4 824,660 + MIT1002_00751 0.76 -2.9 824,850 + +0.5 824,862 + -1.0 824,906 - +0.2 824,957 + -1.4 824,969 + +0.8 824,969 + -0.3 824,969 + +0.2 824,969 + +1.3 824,969 + -0.6 824,977 - -1.4 824,977 - -0.2 825,039 + +0.3 825,039 + +1.5 825,113 - MIT1002_00752 0.14 -1.2 825,176 - MIT1002_00752 0.19 -1.7 825,234 + MIT1002_00752 0.24 -1.9 825,235 + MIT1002_00752 0.24 -1.2 825,928 + MIT1002_00752 0.77 +1.1 825,936 - MIT1002_00752 0.77 -2.9 825,936 - MIT1002_00752 0.77 +1.5 826,014 + MIT1002_00752 0.83 +0.1 826,022 - MIT1002_00752 0.84 -1.2 826,106 - +2.4 826,223 + -0.1 826,223 + +2.5 826,230 - -0.4 826,230 - -1.2 826,245 + +0.7 826,286 - -2.0 826,325 - -1.7 826,325 - -2.7 826,325 - -2.9 826,531 + MIT1002_00753 0.28 -0.7 826,588 - MIT1002_00753 0.33 +0.6 826,634 + MIT1002_00753 0.38 -2.0 826,642 - MIT1002_00753 0.38 +0.0 826,731 - MIT1002_00753 0.47 -1.2 826,731 - MIT1002_00753 0.47 -1.0 826,787 - MIT1002_00753 0.53 -1.4 826,812 - MIT1002_00753 0.55 -0.5 826,844 - MIT1002_00753 0.58 -1.2 827,027 + MIT1002_00753 0.76 -2.4 827,027 + MIT1002_00753 0.76 -1.6 827,035 - MIT1002_00753 0.77 -5.1 827,035 - MIT1002_00753 0.77 -2.0 827,035 - MIT1002_00753 0.77 -3.9 827,035 - MIT1002_00753 0.77 -1.3 827,035 - MIT1002_00753 0.77 -1.4 827,035 - MIT1002_00753 0.77 -2.8 827,058 - MIT1002_00753 0.79 -3.0 827,141 + MIT1002_00753 0.87 -0.9 827,141 + MIT1002_00753 0.87 -0.9 827,149 - MIT1002_00753 0.88 -5.9 827,149 - MIT1002_00753 0.88 +0.4
Or see this region's nucleotide sequence