Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00713

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00712 and MIT1002_00713 are separated by 58 nucleotidesMIT1002_00713 and MIT1002_00714 are separated by 86 nucleotidesMIT1002_00714 and MIT1002_00715 are separated by 221 nucleotides MIT1002_00712: MIT1002_00712 - hypothetical protein, at 780,061 to 781,281 _00712 MIT1002_00713: MIT1002_00713 - 5'-nucleotidase, at 781,340 to 781,930 _00713 MIT1002_00714: MIT1002_00714 - Thiol:disulfide interchange protein DsbA precursor, at 782,017 to 782,649 _00714 MIT1002_00715: MIT1002_00715 - hypothetical protein, at 782,871 to 782,978 _00715 Position (kb) 781 782Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 780.345 kb on - strand, within MIT1002_00712at 780.356 kb on + strand, within MIT1002_00712at 780.361 kb on - strand, within MIT1002_00712at 780.363 kb on + strand, within MIT1002_00712at 780.368 kb on + strand, within MIT1002_00712at 780.386 kb on - strand, within MIT1002_00712at 780.404 kb on - strand, within MIT1002_00712at 780.430 kb on - strand, within MIT1002_00712at 780.432 kb on + strand, within MIT1002_00712at 780.432 kb on + strand, within MIT1002_00712at 780.432 kb on + strand, within MIT1002_00712at 780.432 kb on + strand, within MIT1002_00712at 780.432 kb on + strand, within MIT1002_00712at 780.440 kb on - strand, within MIT1002_00712at 780.440 kb on - strand, within MIT1002_00712at 780.466 kb on - strand, within MIT1002_00712at 780.466 kb on - strand, within MIT1002_00712at 780.572 kb on + strand, within MIT1002_00712at 780.572 kb on + strand, within MIT1002_00712at 780.580 kb on - strand, within MIT1002_00712at 780.580 kb on - strand, within MIT1002_00712at 780.582 kb on + strand, within MIT1002_00712at 780.582 kb on + strand, within MIT1002_00712at 780.582 kb on + strand, within MIT1002_00712at 780.590 kb on - strand, within MIT1002_00712at 780.631 kb on + strand, within MIT1002_00712at 780.664 kb on + strand, within MIT1002_00712at 780.664 kb on + strand, within MIT1002_00712at 780.699 kb on + strand, within MIT1002_00712at 780.707 kb on + strand, within MIT1002_00712at 780.746 kb on + strand, within MIT1002_00712at 780.754 kb on - strand, within MIT1002_00712at 780.771 kb on + strand, within MIT1002_00712at 780.858 kb on - strand, within MIT1002_00712at 780.959 kb on - strand, within MIT1002_00712at 781.022 kb on + strand, within MIT1002_00712at 781.022 kb on + strand, within MIT1002_00712at 781.022 kb on + strand, within MIT1002_00712at 781.022 kb on + strand, within MIT1002_00712at 781.022 kb on + strand, within MIT1002_00712at 781.022 kb on + strand, within MIT1002_00712at 781.027 kb on + strand, within MIT1002_00712at 781.027 kb on + strand, within MIT1002_00712at 781.030 kb on - strand, within MIT1002_00712at 781.030 kb on - strand, within MIT1002_00712at 781.030 kb on - strand, within MIT1002_00712at 781.030 kb on - strand, within MIT1002_00712at 781.030 kb on - strand, within MIT1002_00712at 781.032 kb on - strand, within MIT1002_00712at 781.122 kb on + strand, within MIT1002_00712at 781.196 kb on - strandat 781.332 kb on - strandat 781.333 kb on - strandat 781.372 kb on + strandat 781.372 kb on + strandat 781.379 kb on - strandat 781.387 kb on - strandat 781.389 kb on + strandat 781.392 kb on - strandat 781.428 kb on + strand, within MIT1002_00713at 781.436 kb on - strand, within MIT1002_00713at 781.436 kb on - strand, within MIT1002_00713at 781.460 kb on + strand, within MIT1002_00713at 781.568 kb on - strand, within MIT1002_00713at 781.661 kb on + strand, within MIT1002_00713at 781.793 kb on - strand, within MIT1002_00713at 781.814 kb on - strand, within MIT1002_00713at 782.123 kb on + strand, within MIT1002_00714at 782.723 kb on - strandat 782.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
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780,345 - MIT1002_00712 0.23 +0.2
780,356 + MIT1002_00712 0.24 +0.8
780,361 - MIT1002_00712 0.25 -0.0
780,363 + MIT1002_00712 0.25 -0.3
780,368 + MIT1002_00712 0.25 +0.9
780,386 - MIT1002_00712 0.27 +0.5
780,404 - MIT1002_00712 0.28 -0.3
780,430 - MIT1002_00712 0.30 -1.9
780,432 + MIT1002_00712 0.30 +0.2
780,432 + MIT1002_00712 0.30 +0.3
780,432 + MIT1002_00712 0.30 +0.3
780,432 + MIT1002_00712 0.30 +0.4
780,432 + MIT1002_00712 0.30 +0.1
780,440 - MIT1002_00712 0.31 -1.0
780,440 - MIT1002_00712 0.31 -0.2
780,466 - MIT1002_00712 0.33 -1.7
780,466 - MIT1002_00712 0.33 -0.1
780,572 + MIT1002_00712 0.42 +1.4
780,572 + MIT1002_00712 0.42 -0.0
780,580 - MIT1002_00712 0.43 -0.2
780,580 - MIT1002_00712 0.43 -2.3
780,582 + MIT1002_00712 0.43 +0.9
780,582 + MIT1002_00712 0.43 +0.3
780,582 + MIT1002_00712 0.43 -0.9
780,590 - MIT1002_00712 0.43 -0.8
780,631 + MIT1002_00712 0.47 -1.3
780,664 + MIT1002_00712 0.49 -3.0
780,664 + MIT1002_00712 0.49 +1.2
780,699 + MIT1002_00712 0.52 -0.8
780,707 + MIT1002_00712 0.53 +0.5
780,746 + MIT1002_00712 0.56 -0.1
780,754 - MIT1002_00712 0.57 +0.7
780,771 + MIT1002_00712 0.58 +0.5
780,858 - MIT1002_00712 0.65 -0.0
780,959 - MIT1002_00712 0.74 +0.3
781,022 + MIT1002_00712 0.79 +0.2
781,022 + MIT1002_00712 0.79 +0.9
781,022 + MIT1002_00712 0.79 +0.3
781,022 + MIT1002_00712 0.79 +0.1
781,022 + MIT1002_00712 0.79 +0.6
781,022 + MIT1002_00712 0.79 +0.3
781,027 + MIT1002_00712 0.79 +0.2
781,027 + MIT1002_00712 0.79 -0.6
781,030 - MIT1002_00712 0.79 +0.2
781,030 - MIT1002_00712 0.79 -0.3
781,030 - MIT1002_00712 0.79 +0.3
781,030 - MIT1002_00712 0.79 -0.2
781,030 - MIT1002_00712 0.79 -1.7
781,032 - MIT1002_00712 0.80 +0.6
781,122 + MIT1002_00712 0.87 -0.1
781,196 - -0.1
781,332 - +0.4
781,333 - +1.8
781,372 + -2.4
781,372 + +1.3
781,379 - +0.5
781,387 - +0.0
781,389 + -0.2
781,392 - +0.2
781,428 + MIT1002_00713 0.15 -0.0
781,436 - MIT1002_00713 0.16 -0.5
781,436 - MIT1002_00713 0.16 +3.7
781,460 + MIT1002_00713 0.20 +0.0
781,568 - MIT1002_00713 0.39 +1.7
781,661 + MIT1002_00713 0.54 -1.2
781,793 - MIT1002_00713 0.77 -2.4
781,814 - MIT1002_00713 0.80 +0.3
782,123 + MIT1002_00714 0.17 -1.4
782,723 - -0.1
782,842 - +0.7

Or see this region's nucleotide sequence