Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00546 and MIT1002_00547 are separated by 92 nucleotides MIT1002_00547 and MIT1002_00548 are separated by 48 nucleotides MIT1002_00548 and MIT1002_00549 are separated by 344 nucleotides
MIT1002_00546: MIT1002_00546 - hypothetical protein, at 596,263 to 596,574
_00546
MIT1002_00547: MIT1002_00547 - Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein, at 596,667 to 597,053
_00547
MIT1002_00548: MIT1002_00548 - Rho-binding antiterminator, at 597,102 to 597,356
_00548
MIT1002_00549: MIT1002_00549 - Phosphate-selective porin, at 597,701 to 598,819
_00549
Position (kb) 597
598 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 596.172 kb on + strand at 596.180 kb on - strand at 596.182 kb on - strand at 596.247 kb on + strand at 596.314 kb on + strand, within MIT1002_00546 at 596.339 kb on + strand, within MIT1002_00546 at 596.339 kb on + strand, within MIT1002_00546 at 596.347 kb on - strand, within MIT1002_00546 at 596.379 kb on + strand, within MIT1002_00546 at 596.480 kb on - strand, within MIT1002_00546 at 596.492 kb on - strand, within MIT1002_00546 at 596.509 kb on + strand, within MIT1002_00546 at 596.515 kb on - strand, within MIT1002_00546 at 596.517 kb on - strand, within MIT1002_00546 at 596.594 kb on + strand at 596.594 kb on + strand at 596.594 kb on + strand at 596.602 kb on - strand at 596.647 kb on - strand at 596.651 kb on + strand at 596.651 kb on + strand at 596.659 kb on - strand at 596.666 kb on + strand at 596.725 kb on + strand, within MIT1002_00547 at 596.733 kb on - strand, within MIT1002_00547 at 596.735 kb on - strand, within MIT1002_00547 at 596.775 kb on - strand, within MIT1002_00547 at 596.790 kb on - strand, within MIT1002_00547 at 596.909 kb on + strand, within MIT1002_00547 at 596.916 kb on + strand, within MIT1002_00547 at 596.917 kb on - strand, within MIT1002_00547 at 596.973 kb on + strand, within MIT1002_00547 at 596.981 kb on - strand, within MIT1002_00547 at 596.981 kb on - strand, within MIT1002_00547 at 597.001 kb on - strand, within MIT1002_00547 at 597.006 kb on + strand, within MIT1002_00547 at 597.091 kb on + strand at 597.109 kb on - strand at 597.206 kb on - strand, within MIT1002_00548 at 597.210 kb on + strand, within MIT1002_00548 at 597.219 kb on - strand, within MIT1002_00548 at 597.246 kb on + strand, within MIT1002_00548 at 597.254 kb on - strand, within MIT1002_00548 at 597.296 kb on + strand, within MIT1002_00548 at 597.304 kb on - strand, within MIT1002_00548 at 597.305 kb on + strand, within MIT1002_00548 at 597.313 kb on - strand, within MIT1002_00548 at 597.351 kb on + strand at 597.370 kb on - strand at 597.382 kb on - strand at 597.389 kb on + strand at 597.402 kb on + strand at 597.402 kb on + strand at 597.449 kb on + strand at 597.543 kb on - strand at 597.543 kb on - strand at 597.610 kb on + strand at 597.641 kb on - strand at 597.805 kb on + strand at 597.849 kb on - strand, within MIT1002_00549 at 597.941 kb on + strand, within MIT1002_00549 at 597.951 kb on + strand, within MIT1002_00549 at 598.014 kb on + strand, within MIT1002_00549 at 598.014 kb on + strand, within MIT1002_00549 at 598.022 kb on + strand, within MIT1002_00549
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3 remove 596,172 + -0.2 596,180 - -3.2 596,182 - -0.0 596,247 + +1.0 596,314 + MIT1002_00546 0.16 +1.3 596,339 + MIT1002_00546 0.24 -1.3 596,339 + MIT1002_00546 0.24 +0.4 596,347 - MIT1002_00546 0.27 +0.3 596,379 + MIT1002_00546 0.37 -0.6 596,480 - MIT1002_00546 0.70 -2.3 596,492 - MIT1002_00546 0.73 -0.8 596,509 + MIT1002_00546 0.79 +0.4 596,515 - MIT1002_00546 0.81 -0.9 596,517 - MIT1002_00546 0.81 -3.6 596,594 + -0.9 596,594 + +0.3 596,594 + +0.5 596,602 - +0.2 596,647 - +0.5 596,651 + +1.2 596,651 + +0.5 596,659 - -1.5 596,666 + +0.7 596,725 + MIT1002_00547 0.15 -0.0 596,733 - MIT1002_00547 0.17 +0.5 596,735 - MIT1002_00547 0.18 +0.2 596,775 - MIT1002_00547 0.28 +1.3 596,790 - MIT1002_00547 0.32 -0.8 596,909 + MIT1002_00547 0.63 -0.9 596,916 + MIT1002_00547 0.64 +2.5 596,917 - MIT1002_00547 0.65 -0.4 596,973 + MIT1002_00547 0.79 -0.5 596,981 - MIT1002_00547 0.81 -0.8 596,981 - MIT1002_00547 0.81 +0.7 597,001 - MIT1002_00547 0.86 +0.2 597,006 + MIT1002_00547 0.88 -0.3 597,091 + +0.7 597,109 - +0.0 597,206 - MIT1002_00548 0.41 -0.1 597,210 + MIT1002_00548 0.42 +0.6 597,219 - MIT1002_00548 0.46 +1.5 597,246 + MIT1002_00548 0.56 +0.6 597,254 - MIT1002_00548 0.60 +0.2 597,296 + MIT1002_00548 0.76 +0.6 597,304 - MIT1002_00548 0.79 +0.7 597,305 + MIT1002_00548 0.80 +0.5 597,313 - MIT1002_00548 0.83 +0.8 597,351 + +0.5 597,370 - -0.3 597,382 - -2.3 597,389 + +0.5 597,402 + +1.1 597,402 + -2.2 597,449 + -0.6 597,543 - +0.9 597,543 - -2.2 597,610 + -0.2 597,641 - -0.9 597,805 + +0.3 597,849 - MIT1002_00549 0.13 -1.0 597,941 + MIT1002_00549 0.21 -0.8 597,951 + MIT1002_00549 0.22 +0.7 598,014 + MIT1002_00549 0.28 +2.0 598,014 + MIT1002_00549 0.28 +0.7 598,022 + MIT1002_00549 0.29 -0.7
Or see this region's nucleotide sequence