Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00536 and MIT1002_00537 are separated by 77 nucleotides MIT1002_00537 and MIT1002_00538 are separated by 100 nucleotides MIT1002_00538 and MIT1002_00539 are separated by 76 nucleotides
MIT1002_00536: MIT1002_00536 - putative iron-regulated membrane protein, at 583,042 to 583,761
_00536
MIT1002_00537: MIT1002_00537 - NYN domain protein, at 583,839 to 584,309
_00537
MIT1002_00538: MIT1002_00538 - Gamma-glutamyltranspeptidase precursor, at 584,410 to 586,128
_00538
MIT1002_00539: MIT1002_00539 - Malate-2H(+)/Na(+)-lactate antiporter, at 586,205 to 587,581
_00539
Position (kb) 584
585
586
587 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 583.410 kb on + strand, within MIT1002_00536 at 583.502 kb on + strand, within MIT1002_00536 at 583.522 kb on - strand, within MIT1002_00536 at 583.570 kb on - strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.603 kb on - strand, within MIT1002_00536 at 583.604 kb on - strand, within MIT1002_00536 at 583.604 kb on - strand, within MIT1002_00536 at 583.604 kb on - strand, within MIT1002_00536 at 583.629 kb on + strand, within MIT1002_00536 at 583.683 kb on - strand, within MIT1002_00536 at 583.693 kb on - strand at 583.693 kb on - strand at 583.701 kb on - strand at 583.716 kb on + strand at 583.724 kb on - strand at 583.732 kb on + strand at 583.732 kb on + strand at 583.732 kb on + strand at 583.732 kb on + strand at 583.856 kb on - strand at 583.885 kb on - strand at 583.885 kb on - strand at 583.896 kb on - strand, within MIT1002_00537 at 583.985 kb on - strand, within MIT1002_00537 at 584.055 kb on - strand, within MIT1002_00537 at 584.056 kb on - strand, within MIT1002_00537 at 584.070 kb on + strand, within MIT1002_00537 at 584.110 kb on - strand, within MIT1002_00537 at 584.119 kb on + strand, within MIT1002_00537 at 584.126 kb on - strand, within MIT1002_00537 at 584.137 kb on + strand, within MIT1002_00537 at 584.184 kb on + strand, within MIT1002_00537 at 584.222 kb on + strand, within MIT1002_00537 at 584.231 kb on - strand, within MIT1002_00537 at 584.335 kb on - strand at 584.388 kb on + strand at 584.401 kb on - strand at 584.401 kb on - strand at 584.401 kb on - strand at 584.407 kb on + strand at 584.428 kb on + strand at 584.436 kb on - strand at 584.530 kb on - strand at 584.530 kb on - strand at 584.535 kb on - strand at 584.542 kb on - strand at 584.567 kb on - strand at 584.621 kb on + strand, within MIT1002_00538 at 584.623 kb on + strand, within MIT1002_00538 at 584.631 kb on - strand, within MIT1002_00538 at 584.631 kb on - strand, within MIT1002_00538 at 584.631 kb on - strand, within MIT1002_00538 at 584.662 kb on + strand, within MIT1002_00538 at 584.751 kb on + strand, within MIT1002_00538 at 584.751 kb on + strand, within MIT1002_00538 at 584.759 kb on - strand, within MIT1002_00538 at 584.759 kb on - strand, within MIT1002_00538 at 584.759 kb on - strand, within MIT1002_00538 at 584.759 kb on - strand, within MIT1002_00538 at 584.787 kb on + strand, within MIT1002_00538 at 584.795 kb on - strand, within MIT1002_00538 at 584.814 kb on - strand, within MIT1002_00538 at 584.817 kb on + strand, within MIT1002_00538 at 584.890 kb on + strand, within MIT1002_00538 at 584.890 kb on + strand, within MIT1002_00538 at 584.898 kb on - strand, within MIT1002_00538 at 584.911 kb on - strand, within MIT1002_00538 at 584.921 kb on - strand, within MIT1002_00538 at 584.945 kb on + strand, within MIT1002_00538 at 584.945 kb on + strand, within MIT1002_00538 at 584.945 kb on + strand, within MIT1002_00538 at 584.945 kb on + strand, within MIT1002_00538 at 584.954 kb on + strand, within MIT1002_00538 at 584.959 kb on + strand, within MIT1002_00538 at 584.976 kb on + strand, within MIT1002_00538 at 585.062 kb on + strand, within MIT1002_00538 at 585.119 kb on + strand, within MIT1002_00538 at 585.121 kb on + strand, within MIT1002_00538 at 585.129 kb on - strand, within MIT1002_00538 at 585.143 kb on + strand, within MIT1002_00538 at 585.185 kb on + strand, within MIT1002_00538 at 585.208 kb on - strand, within MIT1002_00538 at 585.252 kb on + strand, within MIT1002_00538 at 585.266 kb on - strand, within MIT1002_00538 at 585.276 kb on - strand, within MIT1002_00538 at 585.291 kb on + strand, within MIT1002_00538 at 585.291 kb on + strand, within MIT1002_00538 at 585.291 kb on + strand, within MIT1002_00538 at 585.299 kb on - strand, within MIT1002_00538 at 585.299 kb on - strand, within MIT1002_00538 at 585.299 kb on - strand, within MIT1002_00538 at 585.328 kb on + strand, within MIT1002_00538 at 585.374 kb on + strand, within MIT1002_00538 at 585.431 kb on + strand, within MIT1002_00538 at 585.497 kb on + strand, within MIT1002_00538 at 585.497 kb on + strand, within MIT1002_00538 at 585.497 kb on + strand, within MIT1002_00538 at 585.497 kb on + strand, within MIT1002_00538 at 585.497 kb on + strand, within MIT1002_00538 at 585.497 kb on + strand, within MIT1002_00538 at 585.505 kb on - strand, within MIT1002_00538 at 585.505 kb on - strand, within MIT1002_00538 at 585.597 kb on + strand, within MIT1002_00538 at 585.605 kb on - strand, within MIT1002_00538 at 585.637 kb on - strand, within MIT1002_00538 at 585.882 kb on + strand, within MIT1002_00538 at 585.982 kb on - strand at 585.993 kb on - strand at 586.010 kb on + strand at 586.050 kb on + strand at 586.103 kb on - strand at 586.152 kb on + strand at 586.153 kb on + strand at 586.212 kb on + strand at 586.350 kb on + strand, within MIT1002_00539 at 586.366 kb on - strand, within MIT1002_00539 at 586.409 kb on + strand, within MIT1002_00539 at 586.422 kb on - strand, within MIT1002_00539 at 586.422 kb on - strand, within MIT1002_00539 at 586.576 kb on - strand, within MIT1002_00539 at 586.576 kb on - strand, within MIT1002_00539 at 586.586 kb on - strand, within MIT1002_00539 at 586.588 kb on + strand, within MIT1002_00539 at 586.588 kb on + strand, within MIT1002_00539 at 586.588 kb on + strand, within MIT1002_00539 at 586.588 kb on + strand, within MIT1002_00539 at 586.596 kb on - strand, within MIT1002_00539 at 586.596 kb on - strand, within MIT1002_00539 at 586.596 kb on - strand, within MIT1002_00539 at 586.616 kb on + strand, within MIT1002_00539 at 586.696 kb on - strand, within MIT1002_00539 at 586.722 kb on - strand, within MIT1002_00539 at 586.733 kb on + strand, within MIT1002_00539 at 586.733 kb on + strand, within MIT1002_00539 at 586.733 kb on + strand, within MIT1002_00539 at 586.733 kb on + strand, within MIT1002_00539 at 586.741 kb on - strand, within MIT1002_00539 at 586.797 kb on + strand, within MIT1002_00539 at 586.809 kb on + strand, within MIT1002_00539 at 586.894 kb on + strand, within MIT1002_00539 at 586.898 kb on - strand, within MIT1002_00539 at 586.931 kb on + strand, within MIT1002_00539 at 586.931 kb on + strand, within MIT1002_00539 at 586.931 kb on + strand, within MIT1002_00539 at 586.956 kb on + strand, within MIT1002_00539 at 586.976 kb on + strand, within MIT1002_00539 at 586.976 kb on + strand, within MIT1002_00539 at 586.976 kb on + strand, within MIT1002_00539 at 586.976 kb on + strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 587.065 kb on + strand, within MIT1002_00539 at 587.079 kb on - strand, within MIT1002_00539 at 587.082 kb on - strand, within MIT1002_00539
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3 remove 583,410 + MIT1002_00536 0.51 -0.6 583,502 + MIT1002_00536 0.64 +0.2 583,522 - MIT1002_00536 0.67 +1.0 583,570 - MIT1002_00536 0.73 +1.3 583,596 + MIT1002_00536 0.77 -0.2 583,596 + MIT1002_00536 0.77 +0.1 583,596 + MIT1002_00536 0.77 -0.6 583,596 + MIT1002_00536 0.77 -2.0 583,596 + MIT1002_00536 0.77 -0.7 583,603 - MIT1002_00536 0.78 +1.0 583,604 - MIT1002_00536 0.78 +0.1 583,604 - MIT1002_00536 0.78 +1.4 583,604 - MIT1002_00536 0.78 -0.1 583,629 + MIT1002_00536 0.82 +0.8 583,683 - MIT1002_00536 0.89 -7.7 583,693 - +1.0 583,693 - +1.1 583,701 - +0.1 583,716 + -0.4 583,724 - -1.7 583,732 + -0.1 583,732 + -1.0 583,732 + +1.9 583,732 + -0.1 583,856 - +0.1 583,885 - +0.4 583,885 - +0.6 583,896 - MIT1002_00537 0.12 -1.1 583,985 - MIT1002_00537 0.31 -0.0 584,055 - MIT1002_00537 0.46 -0.2 584,056 - MIT1002_00537 0.46 -0.8 584,070 + MIT1002_00537 0.49 +0.9 584,110 - MIT1002_00537 0.58 +1.2 584,119 + MIT1002_00537 0.59 -3.2 584,126 - MIT1002_00537 0.61 +1.1 584,137 + MIT1002_00537 0.63 +1.7 584,184 + MIT1002_00537 0.73 -2.0 584,222 + MIT1002_00537 0.81 +0.4 584,231 - MIT1002_00537 0.83 +0.7 584,335 - -0.0 584,388 + +0.1 584,401 - -1.0 584,401 - -1.5 584,401 - -1.4 584,407 + -1.4 584,428 + +2.5 584,436 - -1.1 584,530 - +0.1 584,530 - -1.2 584,535 - +0.6 584,542 - +0.9 584,567 - +0.7 584,621 + MIT1002_00538 0.12 -0.4 584,623 + MIT1002_00538 0.12 -0.1 584,631 - MIT1002_00538 0.13 -0.0 584,631 - MIT1002_00538 0.13 -0.4 584,631 - MIT1002_00538 0.13 +0.5 584,662 + MIT1002_00538 0.15 +0.5 584,751 + MIT1002_00538 0.20 +0.2 584,751 + MIT1002_00538 0.20 -0.8 584,759 - MIT1002_00538 0.20 -0.3 584,759 - MIT1002_00538 0.20 +1.5 584,759 - MIT1002_00538 0.20 -2.3 584,759 - MIT1002_00538 0.20 -0.1 584,787 + MIT1002_00538 0.22 +1.8 584,795 - MIT1002_00538 0.22 -0.9 584,814 - MIT1002_00538 0.24 +1.0 584,817 + MIT1002_00538 0.24 +0.3 584,890 + MIT1002_00538 0.28 -1.9 584,890 + MIT1002_00538 0.28 +0.1 584,898 - MIT1002_00538 0.28 -2.1 584,911 - MIT1002_00538 0.29 +0.2 584,921 - MIT1002_00538 0.30 +1.0 584,945 + MIT1002_00538 0.31 +0.1 584,945 + MIT1002_00538 0.31 +1.0 584,945 + MIT1002_00538 0.31 -0.4 584,945 + MIT1002_00538 0.31 -0.1 584,954 + MIT1002_00538 0.32 +0.6 584,959 + MIT1002_00538 0.32 +0.9 584,976 + MIT1002_00538 0.33 -0.0 585,062 + MIT1002_00538 0.38 +2.0 585,119 + MIT1002_00538 0.41 -0.2 585,121 + MIT1002_00538 0.41 +0.5 585,129 - MIT1002_00538 0.42 +0.1 585,143 + MIT1002_00538 0.43 -0.5 585,185 + MIT1002_00538 0.45 +0.8 585,208 - MIT1002_00538 0.46 -0.7 585,252 + MIT1002_00538 0.49 -0.2 585,266 - MIT1002_00538 0.50 -0.9 585,276 - MIT1002_00538 0.50 +0.5 585,291 + MIT1002_00538 0.51 +0.1 585,291 + MIT1002_00538 0.51 +0.6 585,291 + MIT1002_00538 0.51 +0.6 585,299 - MIT1002_00538 0.52 -2.3 585,299 - MIT1002_00538 0.52 +0.2 585,299 - MIT1002_00538 0.52 +0.1 585,328 + MIT1002_00538 0.53 +1.2 585,374 + MIT1002_00538 0.56 +0.2 585,431 + MIT1002_00538 0.59 +0.4 585,497 + MIT1002_00538 0.63 +2.3 585,497 + MIT1002_00538 0.63 +0.9 585,497 + MIT1002_00538 0.63 +0.3 585,497 + MIT1002_00538 0.63 -1.9 585,497 + MIT1002_00538 0.63 +0.5 585,497 + MIT1002_00538 0.63 +1.3 585,505 - MIT1002_00538 0.64 -1.2 585,505 - MIT1002_00538 0.64 +0.0 585,597 + MIT1002_00538 0.69 +1.1 585,605 - MIT1002_00538 0.70 -1.3 585,637 - MIT1002_00538 0.71 +1.8 585,882 + MIT1002_00538 0.86 +1.2 585,982 - +0.7 585,993 - -3.4 586,010 + -0.2 586,050 + -0.5 586,103 - +0.1 586,152 + +0.8 586,153 + +0.0 586,212 + +0.4 586,350 + MIT1002_00539 0.11 -0.0 586,366 - MIT1002_00539 0.12 -0.4 586,409 + MIT1002_00539 0.15 +0.4 586,422 - MIT1002_00539 0.16 +0.1 586,422 - MIT1002_00539 0.16 -0.1 586,576 - MIT1002_00539 0.27 -0.6 586,576 - MIT1002_00539 0.27 -0.9 586,586 - MIT1002_00539 0.28 -3.5 586,588 + MIT1002_00539 0.28 +2.3 586,588 + MIT1002_00539 0.28 +1.3 586,588 + MIT1002_00539 0.28 -0.0 586,588 + MIT1002_00539 0.28 -1.1 586,596 - MIT1002_00539 0.28 -2.2 586,596 - MIT1002_00539 0.28 +0.3 586,596 - MIT1002_00539 0.28 -0.9 586,616 + MIT1002_00539 0.30 +1.1 586,696 - MIT1002_00539 0.36 +1.0 586,722 - MIT1002_00539 0.38 +0.9 586,733 + MIT1002_00539 0.38 +0.2 586,733 + MIT1002_00539 0.38 -0.9 586,733 + MIT1002_00539 0.38 +1.6 586,733 + MIT1002_00539 0.38 +0.7 586,741 - MIT1002_00539 0.39 -0.3 586,797 + MIT1002_00539 0.43 -0.4 586,809 + MIT1002_00539 0.44 +0.4 586,894 + MIT1002_00539 0.50 -3.3 586,898 - MIT1002_00539 0.50 -0.1 586,931 + MIT1002_00539 0.53 +0.4 586,931 + MIT1002_00539 0.53 -1.1 586,931 + MIT1002_00539 0.53 -0.9 586,956 + MIT1002_00539 0.55 -0.0 586,976 + MIT1002_00539 0.56 -3.8 586,976 + MIT1002_00539 0.56 -0.1 586,976 + MIT1002_00539 0.56 +0.4 586,976 + MIT1002_00539 0.56 +2.6 586,984 - MIT1002_00539 0.57 +0.9 586,984 - MIT1002_00539 0.57 -0.6 586,984 - MIT1002_00539 0.57 +0.1 586,984 - MIT1002_00539 0.57 +0.1 586,984 - MIT1002_00539 0.57 +1.3 587,065 + MIT1002_00539 0.62 +0.3 587,079 - MIT1002_00539 0.63 +0.3 587,082 - MIT1002_00539 0.64 -0.3
Or see this region's nucleotide sequence