Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00531

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00529 and MIT1002_00530 are separated by 153 nucleotidesMIT1002_00530 and MIT1002_00531 are separated by 264 nucleotidesMIT1002_00531 and MIT1002_00532 are separated by 56 nucleotidesMIT1002_00532 and MIT1002_00533 are separated by 503 nucleotides MIT1002_00529: MIT1002_00529 - Thioredoxin, at 575,905 to 576,774 _00529 MIT1002_00530: MIT1002_00530 - hypothetical protein, at 576,928 to 577,356 _00530 MIT1002_00531: MIT1002_00531 - cysteine desulfurase, SufS family, at 577,621 to 578,799 _00531 MIT1002_00532: MIT1002_00532 - hypothetical protein, at 578,856 to 579,038 _00532 MIT1002_00533: MIT1002_00533 - Adenylosuccinate synthetase, at 579,542 to 580,840 _00533 Position (kb) 577 578 579Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 576.627 kb on - strand, within MIT1002_00529at 576.639 kb on + strand, within MIT1002_00529at 576.688 kb on - strandat 576.714 kb on + strandat 576.804 kb on + strandat 576.900 kb on - strandat 576.910 kb on - strandat 577.038 kb on + strand, within MIT1002_00530at 577.038 kb on + strand, within MIT1002_00530at 577.069 kb on - strand, within MIT1002_00530at 577.070 kb on + strand, within MIT1002_00530at 577.079 kb on - strand, within MIT1002_00530at 577.079 kb on - strand, within MIT1002_00530at 577.085 kb on - strand, within MIT1002_00530at 577.139 kb on - strand, within MIT1002_00530at 577.161 kb on - strand, within MIT1002_00530at 577.166 kb on + strand, within MIT1002_00530at 577.166 kb on + strand, within MIT1002_00530at 577.174 kb on - strand, within MIT1002_00530at 577.174 kb on - strand, within MIT1002_00530at 577.174 kb on - strand, within MIT1002_00530at 577.195 kb on + strand, within MIT1002_00530at 577.200 kb on + strand, within MIT1002_00530at 577.203 kb on - strand, within MIT1002_00530at 577.203 kb on - strand, within MIT1002_00530at 577.203 kb on - strand, within MIT1002_00530at 577.205 kb on + strand, within MIT1002_00530at 577.205 kb on + strand, within MIT1002_00530at 577.205 kb on + strand, within MIT1002_00530at 577.212 kb on + strand, within MIT1002_00530at 577.289 kb on + strand, within MIT1002_00530at 577.297 kb on + strand, within MIT1002_00530at 577.297 kb on + strand, within MIT1002_00530at 577.307 kb on - strand, within MIT1002_00530at 577.379 kb on + strandat 577.429 kb on + strandat 577.429 kb on + strandat 577.437 kb on - strandat 577.437 kb on - strandat 577.442 kb on - strandat 577.442 kb on - strandat 577.444 kb on - strandat 577.588 kb on + strandat 577.588 kb on + strandat 577.588 kb on + strandat 577.596 kb on - strandat 577.710 kb on + strandat 577.810 kb on - strand, within MIT1002_00531at 577.825 kb on + strand, within MIT1002_00531at 577.830 kb on + strand, within MIT1002_00531at 577.910 kb on + strand, within MIT1002_00531at 577.928 kb on - strand, within MIT1002_00531at 578.162 kb on + strand, within MIT1002_00531at 578.189 kb on + strand, within MIT1002_00531at 578.195 kb on + strand, within MIT1002_00531at 578.215 kb on + strand, within MIT1002_00531at 578.286 kb on - strand, within MIT1002_00531at 578.299 kb on - strand, within MIT1002_00531at 578.305 kb on + strand, within MIT1002_00531at 578.305 kb on + strand, within MIT1002_00531at 578.305 kb on + strand, within MIT1002_00531at 578.313 kb on - strand, within MIT1002_00531at 578.313 kb on - strand, within MIT1002_00531at 578.313 kb on - strand, within MIT1002_00531at 578.313 kb on - strand, within MIT1002_00531at 578.313 kb on - strand, within MIT1002_00531at 578.327 kb on - strand, within MIT1002_00531at 578.342 kb on + strand, within MIT1002_00531at 578.342 kb on + strand, within MIT1002_00531at 578.350 kb on - strand, within MIT1002_00531at 578.386 kb on + strand, within MIT1002_00531at 578.465 kb on - strand, within MIT1002_00531at 578.541 kb on - strand, within MIT1002_00531at 578.644 kb on + strand, within MIT1002_00531at 578.692 kb on - strandat 578.696 kb on + strandat 578.696 kb on + strandat 578.704 kb on - strandat 578.704 kb on - strandat 578.738 kb on + strandat 578.751 kb on + strandat 578.751 kb on - strandat 578.756 kb on + strandat 578.756 kb on + strandat 578.756 kb on + strandat 578.756 kb on + strandat 578.756 kb on - strandat 578.764 kb on - strandat 578.764 kb on - strandat 578.794 kb on + strandat 578.837 kb on - strandat 578.861 kb on + strandat 578.874 kb on + strandat 578.910 kb on - strand, within MIT1002_00532at 578.968 kb on + strand, within MIT1002_00532at 578.968 kb on + strand, within MIT1002_00532at 578.976 kb on - strand, within MIT1002_00532at 579.010 kb on + strand, within MIT1002_00532at 579.058 kb on - strandat 579.092 kb on + strandat 579.102 kb on - strandat 579.104 kb on + strandat 579.112 kb on - strandat 579.125 kb on - strandat 579.154 kb on - strandat 579.212 kb on + strandat 579.239 kb on - strandat 579.291 kb on + strandat 579.295 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
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576,627 - MIT1002_00529 0.83 -0.7
576,639 + MIT1002_00529 0.84 -0.9
576,688 - -1.9
576,714 + +0.9
576,804 + +1.0
576,900 - +0.4
576,910 - -0.0
577,038 + MIT1002_00530 0.26 +0.3
577,038 + MIT1002_00530 0.26 -0.2
577,069 - MIT1002_00530 0.33 -0.2
577,070 + MIT1002_00530 0.33 +0.5
577,079 - MIT1002_00530 0.35 -1.5
577,079 - MIT1002_00530 0.35 -2.2
577,085 - MIT1002_00530 0.37 +0.3
577,139 - MIT1002_00530 0.49 +0.6
577,161 - MIT1002_00530 0.54 +1.2
577,166 + MIT1002_00530 0.55 +0.4
577,166 + MIT1002_00530 0.55 +0.6
577,174 - MIT1002_00530 0.57 -0.9
577,174 - MIT1002_00530 0.57 -0.6
577,174 - MIT1002_00530 0.57 +0.1
577,195 + MIT1002_00530 0.62 -1.2
577,200 + MIT1002_00530 0.63 +0.7
577,203 - MIT1002_00530 0.64 -3.5
577,203 - MIT1002_00530 0.64 -0.9
577,203 - MIT1002_00530 0.64 +0.2
577,205 + MIT1002_00530 0.65 -0.5
577,205 + MIT1002_00530 0.65 +0.9
577,205 + MIT1002_00530 0.65 -0.2
577,212 + MIT1002_00530 0.66 +0.4
577,289 + MIT1002_00530 0.84 +1.0
577,297 + MIT1002_00530 0.86 +0.7
577,297 + MIT1002_00530 0.86 -0.5
577,307 - MIT1002_00530 0.88 +0.8
577,379 + -0.1
577,429 + +1.3
577,429 + -0.4
577,437 - -0.2
577,437 - +0.1
577,442 - -0.4
577,442 - +0.6
577,444 - -0.8
577,588 + +0.7
577,588 + +0.6
577,588 + -0.3
577,596 - -2.2
577,710 + -0.1
577,810 - MIT1002_00531 0.16 -0.6
577,825 + MIT1002_00531 0.17 +0.4
577,830 + MIT1002_00531 0.18 -0.2
577,910 + MIT1002_00531 0.25 -0.9
577,928 - MIT1002_00531 0.26 -1.3
578,162 + MIT1002_00531 0.46 -0.1
578,189 + MIT1002_00531 0.48 -1.8
578,195 + MIT1002_00531 0.49 -0.6
578,215 + MIT1002_00531 0.50 -0.4
578,286 - MIT1002_00531 0.56 -0.5
578,299 - MIT1002_00531 0.58 -1.7
578,305 + MIT1002_00531 0.58 -0.7
578,305 + MIT1002_00531 0.58 +1.0
578,305 + MIT1002_00531 0.58 +1.1
578,313 - MIT1002_00531 0.59 -0.3
578,313 - MIT1002_00531 0.59 -2.8
578,313 - MIT1002_00531 0.59 -2.2
578,313 - MIT1002_00531 0.59 -3.7
578,313 - MIT1002_00531 0.59 +0.4
578,327 - MIT1002_00531 0.60 -0.0
578,342 + MIT1002_00531 0.61 +0.3
578,342 + MIT1002_00531 0.61 -0.6
578,350 - MIT1002_00531 0.62 +0.5
578,386 + MIT1002_00531 0.65 +0.9
578,465 - MIT1002_00531 0.72 +0.7
578,541 - MIT1002_00531 0.78 -2.0
578,644 + MIT1002_00531 0.87 +0.2
578,692 - +0.2
578,696 + +0.5
578,696 + +0.1
578,704 - +0.3
578,704 - +0.0
578,738 + +0.5
578,751 + +1.9
578,751 - -4.1
578,756 + +0.2
578,756 + +1.1
578,756 + -0.4
578,756 + -0.8
578,756 - +0.3
578,764 - -1.6
578,764 - +1.5
578,794 + +1.1
578,837 - -0.4
578,861 + -2.3
578,874 + -1.7
578,910 - MIT1002_00532 0.30 +0.8
578,968 + MIT1002_00532 0.61 +0.8
578,968 + MIT1002_00532 0.61 -1.0
578,976 - MIT1002_00532 0.66 -0.1
579,010 + MIT1002_00532 0.84 -0.3
579,058 - +0.0
579,092 + +0.4
579,102 - -0.0
579,104 + -0.9
579,112 - +0.3
579,125 - +0.4
579,154 - +1.6
579,212 + +0.5
579,239 - +0.6
579,291 + +0.8
579,295 + -0.6

Or see this region's nucleotide sequence