Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00522 and MIT1002_00523 are separated by 60 nucleotides MIT1002_00523 and MIT1002_00524 are separated by 66 nucleotides MIT1002_00524 and MIT1002_00525 are separated by 186 nucleotides MIT1002_00525 and MIT1002_00526 are separated by 194 nucleotides
MIT1002_00522: MIT1002_00522 - N5-carboxyaminoimidazole ribonucleotide synthase, at 568,772 to 569,908
_00522
MIT1002_00523: MIT1002_00523 - tRNA-Thr, at 569,969 to 570,044
_00523
MIT1002_00524: MIT1002_00524 - hypothetical protein, at 570,111 to 570,656
_00524
MIT1002_00525: MIT1002_00525 - DNA protection during starvation protein 2, at 570,843 to 571,316
_00525
MIT1002_00526: MIT1002_00526 - Soluble aldose sugar dehydrogenase YliI precursor, at 571,511 to 572,692
_00526
Position (kb) 570
571
572 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 569.858 kb on + strand at 569.866 kb on - strand at 570.089 kb on - strand at 570.178 kb on - strand, within MIT1002_00524 at 570.279 kb on + strand, within MIT1002_00524 at 570.279 kb on + strand, within MIT1002_00524 at 570.293 kb on + strand, within MIT1002_00524 at 570.294 kb on + strand, within MIT1002_00524 at 570.323 kb on + strand, within MIT1002_00524 at 570.333 kb on - strand, within MIT1002_00524 at 570.338 kb on + strand, within MIT1002_00524 at 570.363 kb on - strand, within MIT1002_00524 at 570.493 kb on + strand, within MIT1002_00524 at 570.536 kb on - strand, within MIT1002_00524 at 570.549 kb on - strand, within MIT1002_00524 at 570.564 kb on + strand, within MIT1002_00524 at 570.589 kb on + strand, within MIT1002_00524 at 570.604 kb on - strand at 570.719 kb on + strand at 570.826 kb on + strand at 570.828 kb on + strand at 570.834 kb on + strand at 570.842 kb on - strand at 571.007 kb on + strand, within MIT1002_00525 at 571.007 kb on + strand, within MIT1002_00525 at 571.007 kb on + strand, within MIT1002_00525 at 571.007 kb on + strand, within MIT1002_00525 at 571.012 kb on + strand, within MIT1002_00525 at 571.012 kb on + strand, within MIT1002_00525 at 571.015 kb on - strand, within MIT1002_00525 at 571.015 kb on - strand, within MIT1002_00525 at 571.015 kb on - strand, within MIT1002_00525 at 571.074 kb on + strand, within MIT1002_00525 at 571.084 kb on + strand, within MIT1002_00525 at 571.092 kb on - strand, within MIT1002_00525 at 571.092 kb on - strand, within MIT1002_00525 at 571.121 kb on + strand, within MIT1002_00525 at 571.130 kb on - strand, within MIT1002_00525 at 571.205 kb on + strand, within MIT1002_00525 at 571.213 kb on - strand, within MIT1002_00525 at 571.215 kb on + strand, within MIT1002_00525 at 571.235 kb on + strand, within MIT1002_00525 at 571.241 kb on - strand, within MIT1002_00525 at 571.305 kb on - strand at 571.308 kb on - strand at 571.371 kb on + strand at 571.379 kb on - strand at 571.379 kb on - strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.418 kb on - strand at 571.432 kb on + strand at 571.467 kb on - strand at 571.548 kb on - strand at 571.755 kb on + strand, within MIT1002_00526 at 571.758 kb on + strand, within MIT1002_00526 at 571.786 kb on - strand, within MIT1002_00526 at 571.801 kb on + strand, within MIT1002_00526 at 571.804 kb on - strand, within MIT1002_00526 at 571.804 kb on - strand, within MIT1002_00526 at 571.841 kb on + strand, within MIT1002_00526 at 571.846 kb on - strand, within MIT1002_00526 at 571.894 kb on - strand, within MIT1002_00526 at 571.952 kb on - strand, within MIT1002_00526 at 571.954 kb on + strand, within MIT1002_00526 at 571.954 kb on + strand, within MIT1002_00526 at 571.954 kb on + strand, within MIT1002_00526 at 571.954 kb on + strand, within MIT1002_00526 at 571.954 kb on + strand, within MIT1002_00526 at 571.962 kb on - strand, within MIT1002_00526 at 572.069 kb on + strand, within MIT1002_00526 at 572.079 kb on - strand, within MIT1002_00526 at 572.111 kb on + strand, within MIT1002_00526 at 572.169 kb on - strand, within MIT1002_00526 at 572.171 kb on + strand, within MIT1002_00526 at 572.171 kb on + strand, within MIT1002_00526 at 572.179 kb on - strand, within MIT1002_00526 at 572.194 kb on + strand, within MIT1002_00526 at 572.234 kb on + strand, within MIT1002_00526 at 572.242 kb on - strand, within MIT1002_00526
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3 remove 569,858 + -7.7 569,866 - -2.8 570,089 - -1.8 570,178 - MIT1002_00524 0.12 -2.4 570,279 + MIT1002_00524 0.31 +1.1 570,279 + MIT1002_00524 0.31 -1.0 570,293 + MIT1002_00524 0.33 +1.1 570,294 + MIT1002_00524 0.34 -3.2 570,323 + MIT1002_00524 0.39 -0.8 570,333 - MIT1002_00524 0.41 +0.6 570,338 + MIT1002_00524 0.42 -0.0 570,363 - MIT1002_00524 0.46 -2.2 570,493 + MIT1002_00524 0.70 +2.8 570,536 - MIT1002_00524 0.78 -1.2 570,549 - MIT1002_00524 0.80 -3.7 570,564 + MIT1002_00524 0.83 -0.8 570,589 + MIT1002_00524 0.88 +1.4 570,604 - -1.2 570,719 + -0.9 570,826 + -2.1 570,828 + -0.4 570,834 + -1.7 570,842 - -1.4 571,007 + MIT1002_00525 0.35 -0.9 571,007 + MIT1002_00525 0.35 +1.4 571,007 + MIT1002_00525 0.35 +0.7 571,007 + MIT1002_00525 0.35 +1.6 571,012 + MIT1002_00525 0.36 -3.0 571,012 + MIT1002_00525 0.36 -2.2 571,015 - MIT1002_00525 0.36 -0.3 571,015 - MIT1002_00525 0.36 +0.4 571,015 - MIT1002_00525 0.36 -0.0 571,074 + MIT1002_00525 0.49 +0.3 571,084 + MIT1002_00525 0.51 -0.3 571,092 - MIT1002_00525 0.53 -0.2 571,092 - MIT1002_00525 0.53 -2.0 571,121 + MIT1002_00525 0.59 -0.8 571,130 - MIT1002_00525 0.61 +0.1 571,205 + MIT1002_00525 0.76 +2.0 571,213 - MIT1002_00525 0.78 +0.8 571,215 + MIT1002_00525 0.78 +0.0 571,235 + MIT1002_00525 0.83 -1.3 571,241 - MIT1002_00525 0.84 +0.6 571,305 - +0.7 571,308 - +1.8 571,371 + -0.4 571,379 - +0.5 571,379 - +0.8 571,405 + +0.7 571,405 + +0.1 571,405 + +2.1 571,405 + -2.0 571,405 + +0.5 571,405 + -1.4 571,413 - +0.4 571,413 - -0.8 571,413 - -0.2 571,413 - -0.1 571,413 - -0.3 571,413 - -0.6 571,418 - -0.1 571,432 + -1.3 571,467 - +0.4 571,548 - +0.8 571,755 + MIT1002_00526 0.21 +1.4 571,758 + MIT1002_00526 0.21 +1.3 571,786 - MIT1002_00526 0.23 -0.3 571,801 + MIT1002_00526 0.25 -0.3 571,804 - MIT1002_00526 0.25 -1.4 571,804 - MIT1002_00526 0.25 +0.1 571,841 + MIT1002_00526 0.28 -1.1 571,846 - MIT1002_00526 0.28 -2.2 571,894 - MIT1002_00526 0.32 +1.9 571,952 - MIT1002_00526 0.37 +1.2 571,954 + MIT1002_00526 0.37 -0.2 571,954 + MIT1002_00526 0.37 -1.2 571,954 + MIT1002_00526 0.37 +0.1 571,954 + MIT1002_00526 0.37 +0.7 571,954 + MIT1002_00526 0.37 -0.2 571,962 - MIT1002_00526 0.38 +0.0 572,069 + MIT1002_00526 0.47 +1.0 572,079 - MIT1002_00526 0.48 -1.8 572,111 + MIT1002_00526 0.51 -0.4 572,169 - MIT1002_00526 0.56 -0.7 572,171 + MIT1002_00526 0.56 -0.4 572,171 + MIT1002_00526 0.56 -1.3 572,179 - MIT1002_00526 0.57 +0.1 572,194 + MIT1002_00526 0.58 -0.4 572,234 + MIT1002_00526 0.61 -0.2 572,242 - MIT1002_00526 0.62 -1.2
Or see this region's nucleotide sequence