Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00474

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00473 and MIT1002_00474 are separated by 161 nucleotidesMIT1002_00474 and MIT1002_00475 are separated by 5 nucleotides MIT1002_00473: MIT1002_00473 - hypothetical protein, at 517,025 to 517,981 _00473 MIT1002_00474: MIT1002_00474 - flagellar basal body L-ring protein, at 518,143 to 518,892 _00474 MIT1002_00475: MIT1002_00475 - hypothetical protein, at 518,898 to 520,151 _00475 Position (kb) 518 519Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 517.146 kb on + strand, within MIT1002_00473at 517.146 kb on + strand, within MIT1002_00473at 517.153 kb on + strand, within MIT1002_00473at 517.153 kb on + strand, within MIT1002_00473at 517.154 kb on - strand, within MIT1002_00473at 517.154 kb on - strand, within MIT1002_00473at 517.187 kb on + strand, within MIT1002_00473at 517.203 kb on + strand, within MIT1002_00473at 517.208 kb on + strand, within MIT1002_00473at 517.211 kb on - strand, within MIT1002_00473at 517.211 kb on - strand, within MIT1002_00473at 517.211 kb on - strand, within MIT1002_00473at 517.234 kb on - strand, within MIT1002_00473at 517.241 kb on + strand, within MIT1002_00473at 517.249 kb on - strand, within MIT1002_00473at 517.249 kb on - strand, within MIT1002_00473at 517.411 kb on + strand, within MIT1002_00473at 517.429 kb on + strand, within MIT1002_00473at 517.477 kb on + strand, within MIT1002_00473at 517.477 kb on + strand, within MIT1002_00473at 517.605 kb on + strand, within MIT1002_00473at 517.605 kb on + strand, within MIT1002_00473at 517.605 kb on + strand, within MIT1002_00473at 517.613 kb on - strand, within MIT1002_00473at 517.627 kb on - strand, within MIT1002_00473at 517.694 kb on + strand, within MIT1002_00473at 517.718 kb on + strand, within MIT1002_00473at 517.806 kb on + strand, within MIT1002_00473at 517.976 kb on + strandat 517.984 kb on - strandat 517.984 kb on - strandat 517.988 kb on + strandat 518.166 kb on - strandat 518.188 kb on - strandat 518.201 kb on + strandat 518.217 kb on - strandat 518.230 kb on + strand, within MIT1002_00474at 518.230 kb on + strand, within MIT1002_00474at 518.249 kb on + strand, within MIT1002_00474at 518.257 kb on - strand, within MIT1002_00474at 518.313 kb on - strand, within MIT1002_00474at 518.323 kb on - strand, within MIT1002_00474at 518.328 kb on + strand, within MIT1002_00474at 518.339 kb on + strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.370 kb on + strand, within MIT1002_00474at 518.375 kb on + strand, within MIT1002_00474at 518.378 kb on - strand, within MIT1002_00474at 518.378 kb on - strand, within MIT1002_00474at 518.387 kb on + strand, within MIT1002_00474at 518.387 kb on + strand, within MIT1002_00474at 518.387 kb on + strand, within MIT1002_00474at 518.390 kb on - strand, within MIT1002_00474at 518.395 kb on - strand, within MIT1002_00474at 518.395 kb on - strand, within MIT1002_00474at 518.395 kb on - strand, within MIT1002_00474at 518.395 kb on - strand, within MIT1002_00474at 518.525 kb on + strand, within MIT1002_00474at 518.525 kb on + strand, within MIT1002_00474at 518.562 kb on + strand, within MIT1002_00474at 518.598 kb on - strand, within MIT1002_00474at 518.707 kb on + strand, within MIT1002_00474at 518.797 kb on - strand, within MIT1002_00474at 518.817 kb on + strand, within MIT1002_00474at 518.845 kb on + strandat 518.932 kb on + strandat 518.941 kb on - strandat 518.994 kb on + strandat 518.997 kb on - strandat 518.997 kb on - strandat 518.999 kb on + strandat 518.999 kb on + strandat 519.001 kb on - strandat 519.002 kb on - strandat 519.033 kb on - strand, within MIT1002_00475at 519.033 kb on - strand, within MIT1002_00475at 519.038 kb on - strand, within MIT1002_00475at 519.113 kb on + strand, within MIT1002_00475at 519.113 kb on + strand, within MIT1002_00475at 519.121 kb on - strand, within MIT1002_00475at 519.188 kb on + strand, within MIT1002_00475at 519.225 kb on - strand, within MIT1002_00475at 519.227 kb on - strand, within MIT1002_00475at 519.230 kb on + strand, within MIT1002_00475at 519.242 kb on + strand, within MIT1002_00475at 519.242 kb on + strand, within MIT1002_00475at 519.250 kb on - strand, within MIT1002_00475at 519.254 kb on + strand, within MIT1002_00475at 519.326 kb on - strand, within MIT1002_00475at 519.386 kb on + strand, within MIT1002_00475at 519.514 kb on + strand, within MIT1002_00475at 519.514 kb on + strand, within MIT1002_00475at 519.542 kb on - strand, within MIT1002_00475at 519.615 kb on - strand, within MIT1002_00475at 519.700 kb on - strand, within MIT1002_00475at 519.720 kb on - strand, within MIT1002_00475at 519.737 kb on + strand, within MIT1002_00475at 519.762 kb on + strand, within MIT1002_00475at 519.777 kb on + strand, within MIT1002_00475at 519.779 kb on + strand, within MIT1002_00475at 519.785 kb on - strand, within MIT1002_00475at 519.801 kb on - strand, within MIT1002_00475at 519.819 kb on + strand, within MIT1002_00475at 519.819 kb on + strand, within MIT1002_00475at 519.884 kb on - strand, within MIT1002_00475at 519.885 kb on - strand, within MIT1002_00475

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
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517,146 + MIT1002_00473 0.13 +1.2
517,146 + MIT1002_00473 0.13 +0.5
517,153 + MIT1002_00473 0.13 +0.1
517,153 + MIT1002_00473 0.13 -1.0
517,154 - MIT1002_00473 0.13 -0.9
517,154 - MIT1002_00473 0.13 +0.0
517,187 + MIT1002_00473 0.17 +0.7
517,203 + MIT1002_00473 0.19 -0.7
517,208 + MIT1002_00473 0.19 +0.8
517,211 - MIT1002_00473 0.19 -0.1
517,211 - MIT1002_00473 0.19 -2.8
517,211 - MIT1002_00473 0.19 -0.2
517,234 - MIT1002_00473 0.22 +1.8
517,241 + MIT1002_00473 0.23 -1.1
517,249 - MIT1002_00473 0.23 -0.5
517,249 - MIT1002_00473 0.23 -0.8
517,411 + MIT1002_00473 0.40 -1.0
517,429 + MIT1002_00473 0.42 -0.2
517,477 + MIT1002_00473 0.47 -1.2
517,477 + MIT1002_00473 0.47 +0.3
517,605 + MIT1002_00473 0.61 -0.7
517,605 + MIT1002_00473 0.61 +1.8
517,605 + MIT1002_00473 0.61 +0.3
517,613 - MIT1002_00473 0.61 +0.9
517,627 - MIT1002_00473 0.63 -0.5
517,694 + MIT1002_00473 0.70 -0.8
517,718 + MIT1002_00473 0.72 -0.3
517,806 + MIT1002_00473 0.82 -0.9
517,976 + -2.2
517,984 - +1.3
517,984 - -1.2
517,988 + -0.3
518,166 - +0.8
518,188 - +0.1
518,201 + +0.4
518,217 - -0.0
518,230 + MIT1002_00474 0.12 +0.1
518,230 + MIT1002_00474 0.12 +0.8
518,249 + MIT1002_00474 0.14 -0.1
518,257 - MIT1002_00474 0.15 +1.7
518,313 - MIT1002_00474 0.23 -4.1
518,323 - MIT1002_00474 0.24 -1.1
518,328 + MIT1002_00474 0.25 +1.3
518,339 + MIT1002_00474 0.26 -2.5
518,347 - MIT1002_00474 0.27 +0.2
518,347 - MIT1002_00474 0.27 +1.0
518,347 - MIT1002_00474 0.27 -0.5
518,347 - MIT1002_00474 0.27 -1.4
518,347 - MIT1002_00474 0.27 +1.3
518,370 + MIT1002_00474 0.30 +0.4
518,375 + MIT1002_00474 0.31 +0.2
518,378 - MIT1002_00474 0.31 +0.8
518,378 - MIT1002_00474 0.31 -0.2
518,387 + MIT1002_00474 0.33 -0.5
518,387 + MIT1002_00474 0.33 -1.4
518,387 + MIT1002_00474 0.33 -0.2
518,390 - MIT1002_00474 0.33 -1.3
518,395 - MIT1002_00474 0.34 +0.6
518,395 - MIT1002_00474 0.34 +0.0
518,395 - MIT1002_00474 0.34 -1.4
518,395 - MIT1002_00474 0.34 -0.8
518,525 + MIT1002_00474 0.51 +0.1
518,525 + MIT1002_00474 0.51 +0.3
518,562 + MIT1002_00474 0.56 -2.2
518,598 - MIT1002_00474 0.61 -0.5
518,707 + MIT1002_00474 0.75 +0.2
518,797 - MIT1002_00474 0.87 +0.3
518,817 + MIT1002_00474 0.90 +0.4
518,845 + -0.8
518,932 + -0.3
518,941 - +1.0
518,994 + +0.1
518,997 - +0.3
518,997 - +0.4
518,999 + +0.9
518,999 + +2.2
519,001 - -0.1
519,002 - +0.3
519,033 - MIT1002_00475 0.11 +1.1
519,033 - MIT1002_00475 0.11 +1.5
519,038 - MIT1002_00475 0.11 +0.3
519,113 + MIT1002_00475 0.17 -4.2
519,113 + MIT1002_00475 0.17 -3.8
519,121 - MIT1002_00475 0.18 +0.3
519,188 + MIT1002_00475 0.23 -0.2
519,225 - MIT1002_00475 0.26 +1.8
519,227 - MIT1002_00475 0.26 +0.6
519,230 + MIT1002_00475 0.26 +0.5
519,242 + MIT1002_00475 0.27 -1.1
519,242 + MIT1002_00475 0.27 +0.2
519,250 - MIT1002_00475 0.28 -0.3
519,254 + MIT1002_00475 0.28 +1.5
519,326 - MIT1002_00475 0.34 +0.9
519,386 + MIT1002_00475 0.39 -0.5
519,514 + MIT1002_00475 0.49 -4.1
519,514 + MIT1002_00475 0.49 +0.6
519,542 - MIT1002_00475 0.51 -1.7
519,615 - MIT1002_00475 0.57 +0.4
519,700 - MIT1002_00475 0.64 +0.8
519,720 - MIT1002_00475 0.66 +0.4
519,737 + MIT1002_00475 0.67 +1.2
519,762 + MIT1002_00475 0.69 -2.2
519,777 + MIT1002_00475 0.70 -0.1
519,779 + MIT1002_00475 0.70 +1.2
519,785 - MIT1002_00475 0.71 +0.1
519,801 - MIT1002_00475 0.72 -0.4
519,819 + MIT1002_00475 0.73 +0.7
519,819 + MIT1002_00475 0.73 -0.2
519,884 - MIT1002_00475 0.79 +0.9
519,885 - MIT1002_00475 0.79 -0.6

Or see this region's nucleotide sequence