Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00362

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00360 and MIT1002_00361 are separated by 211 nucleotidesMIT1002_00361 and MIT1002_00362 are separated by 64 nucleotidesMIT1002_00362 and MIT1002_00363 are separated by 54 nucleotides MIT1002_00360: MIT1002_00360 - trans-aconitate 2-methyltransferase, at 388,324 to 389,388 _00360 MIT1002_00361: MIT1002_00361 - hypothetical protein, at 389,600 to 389,923 _00361 MIT1002_00362: MIT1002_00362 - Xylose isomerase-like TIM barrel, at 389,988 to 390,941 _00362 MIT1002_00363: MIT1002_00363 - HTH-type transcriptional repressor CytR, at 390,996 to 392,000 _00363 Position (kb) 389 390 391Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 389.299 kb on - strandat 389.501 kb on + strandat 389.511 kb on + strandat 389.656 kb on + strand, within MIT1002_00361at 389.657 kb on + strand, within MIT1002_00361at 389.659 kb on - strand, within MIT1002_00361at 389.672 kb on - strand, within MIT1002_00361at 389.717 kb on + strand, within MIT1002_00361at 389.745 kb on + strand, within MIT1002_00361at 389.747 kb on + strand, within MIT1002_00361at 389.828 kb on + strand, within MIT1002_00361at 389.829 kb on + strand, within MIT1002_00361at 389.829 kb on + strand, within MIT1002_00361at 389.836 kb on + strand, within MIT1002_00361at 389.884 kb on + strand, within MIT1002_00361at 389.884 kb on + strand, within MIT1002_00361at 389.892 kb on - strandat 389.892 kb on - strandat 389.960 kb on + strandat 389.977 kb on + strandat 389.985 kb on - strandat 389.985 kb on - strandat 390.019 kb on + strandat 390.027 kb on - strandat 390.133 kb on - strand, within MIT1002_00362at 390.200 kb on + strand, within MIT1002_00362at 390.212 kb on + strand, within MIT1002_00362at 390.220 kb on - strand, within MIT1002_00362at 390.255 kb on + strand, within MIT1002_00362at 390.289 kb on - strand, within MIT1002_00362at 390.304 kb on - strand, within MIT1002_00362at 390.317 kb on - strand, within MIT1002_00362at 390.317 kb on - strand, within MIT1002_00362at 390.368 kb on + strand, within MIT1002_00362at 390.376 kb on - strand, within MIT1002_00362at 390.376 kb on - strand, within MIT1002_00362at 390.376 kb on - strand, within MIT1002_00362at 390.376 kb on - strand, within MIT1002_00362at 390.376 kb on - strand, within MIT1002_00362at 390.376 kb on - strand, within MIT1002_00362at 390.377 kb on - strand, within MIT1002_00362at 390.398 kb on - strand, within MIT1002_00362at 390.403 kb on + strand, within MIT1002_00362at 390.423 kb on + strand, within MIT1002_00362at 390.424 kb on + strand, within MIT1002_00362at 390.455 kb on + strand, within MIT1002_00362at 390.486 kb on + strand, within MIT1002_00362at 390.525 kb on - strand, within MIT1002_00362at 390.525 kb on - strand, within MIT1002_00362at 390.535 kb on - strand, within MIT1002_00362at 390.535 kb on - strand, within MIT1002_00362at 390.535 kb on - strand, within MIT1002_00362at 390.617 kb on + strand, within MIT1002_00362at 390.617 kb on + strand, within MIT1002_00362at 390.617 kb on + strand, within MIT1002_00362at 390.625 kb on - strand, within MIT1002_00362at 390.625 kb on - strand, within MIT1002_00362at 390.651 kb on + strand, within MIT1002_00362at 390.668 kb on + strand, within MIT1002_00362at 390.704 kb on + strand, within MIT1002_00362at 390.712 kb on + strand, within MIT1002_00362at 390.720 kb on - strand, within MIT1002_00362at 390.735 kb on + strand, within MIT1002_00362at 390.756 kb on - strand, within MIT1002_00362at 390.788 kb on - strand, within MIT1002_00362at 390.883 kb on + strandat 390.964 kb on + strandat 390.969 kb on - strandat 390.971 kb on + strandat 390.972 kb on - strandat 390.999 kb on + strandat 390.999 kb on + strandat 390.999 kb on + strandat 390.999 kb on + strandat 391.007 kb on - strandat 391.024 kb on + strandat 391.036 kb on - strandat 391.043 kb on + strandat 391.214 kb on + strand, within MIT1002_00363at 391.222 kb on - strand, within MIT1002_00363at 391.237 kb on - strand, within MIT1002_00363at 391.304 kb on + strand, within MIT1002_00363at 391.323 kb on + strand, within MIT1002_00363at 391.324 kb on - strand, within MIT1002_00363at 391.334 kb on - strand, within MIT1002_00363at 391.381 kb on + strand, within MIT1002_00363at 391.475 kb on + strand, within MIT1002_00363at 391.478 kb on - strand, within MIT1002_00363at 391.478 kb on - strand, within MIT1002_00363at 391.514 kb on + strand, within MIT1002_00363at 391.535 kb on + strand, within MIT1002_00363at 391.543 kb on - strand, within MIT1002_00363at 391.562 kb on + strand, within MIT1002_00363at 391.569 kb on + strand, within MIT1002_00363at 391.597 kb on + strand, within MIT1002_00363at 391.618 kb on + strand, within MIT1002_00363at 391.640 kb on + strand, within MIT1002_00363at 391.648 kb on - strand, within MIT1002_00363at 391.671 kb on - strand, within MIT1002_00363at 391.811 kb on + strand, within MIT1002_00363at 391.811 kb on + strand, within MIT1002_00363at 391.847 kb on - strand, within MIT1002_00363at 391.849 kb on + strand, within MIT1002_00363at 391.883 kb on - strand, within MIT1002_00363at 391.883 kb on - strand, within MIT1002_00363at 391.939 kb on + strandat 391.939 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
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389,299 - -1.4
389,501 + +0.7
389,511 + -0.0
389,656 + MIT1002_00361 0.17 +0.9
389,657 + MIT1002_00361 0.18 -0.5
389,659 - MIT1002_00361 0.18 +0.1
389,672 - MIT1002_00361 0.22 -0.4
389,717 + MIT1002_00361 0.36 -1.1
389,745 + MIT1002_00361 0.45 -0.0
389,747 + MIT1002_00361 0.45 +0.1
389,828 + MIT1002_00361 0.70 +1.5
389,829 + MIT1002_00361 0.71 +1.8
389,829 + MIT1002_00361 0.71 -0.8
389,836 + MIT1002_00361 0.73 +1.9
389,884 + MIT1002_00361 0.88 +1.7
389,884 + MIT1002_00361 0.88 -0.9
389,892 - -0.6
389,892 - -0.8
389,960 + +0.2
389,977 + +0.9
389,985 - +0.3
389,985 - +0.1
390,019 + +1.1
390,027 - +0.5
390,133 - MIT1002_00362 0.15 -0.1
390,200 + MIT1002_00362 0.22 -0.0
390,212 + MIT1002_00362 0.23 -1.5
390,220 - MIT1002_00362 0.24 +0.7
390,255 + MIT1002_00362 0.28 +0.1
390,289 - MIT1002_00362 0.32 -0.3
390,304 - MIT1002_00362 0.33 -0.1
390,317 - MIT1002_00362 0.34 +1.7
390,317 - MIT1002_00362 0.34 -0.1
390,368 + MIT1002_00362 0.40 +0.6
390,376 - MIT1002_00362 0.41 +0.4
390,376 - MIT1002_00362 0.41 +1.2
390,376 - MIT1002_00362 0.41 -1.9
390,376 - MIT1002_00362 0.41 -3.0
390,376 - MIT1002_00362 0.41 +0.3
390,376 - MIT1002_00362 0.41 +0.9
390,377 - MIT1002_00362 0.41 -3.0
390,398 - MIT1002_00362 0.43 +0.2
390,403 + MIT1002_00362 0.44 -0.8
390,423 + MIT1002_00362 0.46 +0.4
390,424 + MIT1002_00362 0.46 +0.6
390,455 + MIT1002_00362 0.49 -0.3
390,486 + MIT1002_00362 0.52 +1.1
390,525 - MIT1002_00362 0.56 -3.3
390,525 - MIT1002_00362 0.56 -0.6
390,535 - MIT1002_00362 0.57 -2.8
390,535 - MIT1002_00362 0.57 +1.4
390,535 - MIT1002_00362 0.57 -0.2
390,617 + MIT1002_00362 0.66 -1.1
390,617 + MIT1002_00362 0.66 +0.4
390,617 + MIT1002_00362 0.66 -0.4
390,625 - MIT1002_00362 0.67 -0.1
390,625 - MIT1002_00362 0.67 -2.5
390,651 + MIT1002_00362 0.69 -1.2
390,668 + MIT1002_00362 0.71 -0.1
390,704 + MIT1002_00362 0.75 -0.9
390,712 + MIT1002_00362 0.76 +0.6
390,720 - MIT1002_00362 0.77 +0.2
390,735 + MIT1002_00362 0.78 -0.4
390,756 - MIT1002_00362 0.81 +1.3
390,788 - MIT1002_00362 0.84 +0.1
390,883 + +0.5
390,964 + +0.7
390,969 - +0.5
390,971 + -0.5
390,972 - -0.3
390,999 + -0.5
390,999 + +0.7
390,999 + -0.1
390,999 + -4.4
391,007 - -2.6
391,024 + +0.2
391,036 - -3.7
391,043 + -0.5
391,214 + MIT1002_00363 0.22 +1.1
391,222 - MIT1002_00363 0.22 +0.3
391,237 - MIT1002_00363 0.24 +1.0
391,304 + MIT1002_00363 0.31 -2.8
391,323 + MIT1002_00363 0.33 -0.1
391,324 - MIT1002_00363 0.33 -1.3
391,334 - MIT1002_00363 0.34 -0.3
391,381 + MIT1002_00363 0.38 -0.7
391,475 + MIT1002_00363 0.48 -0.7
391,478 - MIT1002_00363 0.48 -2.0
391,478 - MIT1002_00363 0.48 -2.2
391,514 + MIT1002_00363 0.52 -0.7
391,535 + MIT1002_00363 0.54 -0.7
391,543 - MIT1002_00363 0.54 +0.7
391,562 + MIT1002_00363 0.56 +0.5
391,569 + MIT1002_00363 0.57 -1.1
391,597 + MIT1002_00363 0.60 -0.8
391,618 + MIT1002_00363 0.62 -3.6
391,640 + MIT1002_00363 0.64 -1.0
391,648 - MIT1002_00363 0.65 +0.4
391,671 - MIT1002_00363 0.67 -2.0
391,811 + MIT1002_00363 0.81 +0.3
391,811 + MIT1002_00363 0.81 -0.4
391,847 - MIT1002_00363 0.85 +0.7
391,849 + MIT1002_00363 0.85 +0.2
391,883 - MIT1002_00363 0.88 -0.2
391,883 - MIT1002_00363 0.88 -2.5
391,939 + -2.2
391,939 + -0.2

Or see this region's nucleotide sequence