Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00297

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00296 and MIT1002_00297 are separated by 2 nucleotidesMIT1002_00297 and MIT1002_00298 are separated by 15 nucleotides MIT1002_00296: MIT1002_00296 - Cation efflux system protein CzcC, at 318,675 to 319,955 _00296 MIT1002_00297: MIT1002_00297 - Cation efflux system protein CzcB, at 319,958 to 321,139 _00297 MIT1002_00298: MIT1002_00298 - Cation efflux system protein CzcA, at 321,155 to 324,262 _00298 Position (kb) 319 320 321 322Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 319.024 kb on + strand, within MIT1002_00296at 319.053 kb on - strand, within MIT1002_00296at 319.082 kb on - strand, within MIT1002_00296at 319.116 kb on + strand, within MIT1002_00296at 319.118 kb on + strand, within MIT1002_00296at 319.126 kb on - strand, within MIT1002_00296at 319.145 kb on - strand, within MIT1002_00296at 319.146 kb on + strand, within MIT1002_00296at 319.146 kb on + strand, within MIT1002_00296at 319.161 kb on - strand, within MIT1002_00296at 319.176 kb on - strand, within MIT1002_00296at 319.223 kb on + strand, within MIT1002_00296at 319.226 kb on - strand, within MIT1002_00296at 319.231 kb on - strand, within MIT1002_00296at 319.236 kb on - strand, within MIT1002_00296at 319.270 kb on + strand, within MIT1002_00296at 319.278 kb on - strand, within MIT1002_00296at 319.295 kb on - strand, within MIT1002_00296at 319.311 kb on - strand, within MIT1002_00296at 319.313 kb on + strand, within MIT1002_00296at 319.322 kb on + strand, within MIT1002_00296at 319.447 kb on + strand, within MIT1002_00296at 319.497 kb on - strand, within MIT1002_00296at 319.502 kb on - strand, within MIT1002_00296at 319.502 kb on - strand, within MIT1002_00296at 319.502 kb on - strand, within MIT1002_00296at 319.523 kb on + strand, within MIT1002_00296at 319.531 kb on - strand, within MIT1002_00296at 319.533 kb on + strand, within MIT1002_00296at 319.601 kb on + strand, within MIT1002_00296at 319.609 kb on - strand, within MIT1002_00296at 319.617 kb on - strand, within MIT1002_00296at 319.719 kb on + strand, within MIT1002_00296at 319.727 kb on - strand, within MIT1002_00296at 319.727 kb on - strand, within MIT1002_00296at 319.804 kb on - strand, within MIT1002_00296at 319.824 kb on - strand, within MIT1002_00296at 319.881 kb on - strandat 319.881 kb on - strandat 319.883 kb on + strandat 319.883 kb on + strandat 319.883 kb on + strandat 319.891 kb on - strandat 319.891 kb on - strandat 319.896 kb on - strandat 319.936 kb on + strandat 319.957 kb on - strandat 320.123 kb on + strand, within MIT1002_00297at 320.185 kb on - strand, within MIT1002_00297at 320.223 kb on + strand, within MIT1002_00297at 320.254 kb on + strand, within MIT1002_00297at 320.262 kb on - strand, within MIT1002_00297at 320.288 kb on - strand, within MIT1002_00297at 320.337 kb on + strand, within MIT1002_00297at 320.393 kb on - strand, within MIT1002_00297at 320.396 kb on - strand, within MIT1002_00297at 320.458 kb on - strand, within MIT1002_00297at 320.487 kb on - strand, within MIT1002_00297at 320.487 kb on - strand, within MIT1002_00297at 320.489 kb on - strand, within MIT1002_00297at 320.532 kb on - strand, within MIT1002_00297at 320.628 kb on + strand, within MIT1002_00297at 320.647 kb on - strand, within MIT1002_00297at 320.732 kb on - strand, within MIT1002_00297at 320.739 kb on + strand, within MIT1002_00297at 320.739 kb on + strand, within MIT1002_00297at 320.747 kb on - strand, within MIT1002_00297at 320.747 kb on - strand, within MIT1002_00297at 320.747 kb on - strand, within MIT1002_00297at 320.808 kb on + strand, within MIT1002_00297at 320.816 kb on - strand, within MIT1002_00297at 320.817 kb on - strand, within MIT1002_00297at 320.842 kb on + strand, within MIT1002_00297at 320.890 kb on + strand, within MIT1002_00297at 320.958 kb on + strand, within MIT1002_00297at 320.988 kb on + strand, within MIT1002_00297at 320.989 kb on + strand, within MIT1002_00297at 321.062 kb on + strandat 321.134 kb on + strandat 321.134 kb on + strandat 321.142 kb on - strandat 321.142 kb on - strandat 321.277 kb on - strandat 321.301 kb on - strandat 321.306 kb on - strandat 321.379 kb on - strandat 321.394 kb on - strandat 321.405 kb on - strandat 321.525 kb on + strand, within MIT1002_00298at 321.586 kb on + strand, within MIT1002_00298at 321.605 kb on + strand, within MIT1002_00298at 321.613 kb on - strand, within MIT1002_00298at 321.630 kb on + strand, within MIT1002_00298at 321.650 kb on + strand, within MIT1002_00298at 321.693 kb on - strand, within MIT1002_00298at 321.719 kb on - strand, within MIT1002_00298at 321.747 kb on - strand, within MIT1002_00298at 321.831 kb on - strand, within MIT1002_00298at 321.831 kb on - strand, within MIT1002_00298at 321.860 kb on + strand, within MIT1002_00298at 321.868 kb on - strand, within MIT1002_00298at 321.890 kb on + strand, within MIT1002_00298at 321.891 kb on + strand, within MIT1002_00298at 321.891 kb on + strand, within MIT1002_00298at 321.891 kb on + strand, within MIT1002_00298at 321.971 kb on - strand, within MIT1002_00298at 321.982 kb on + strand, within MIT1002_00298at 321.982 kb on + strand, within MIT1002_00298at 322.034 kb on + strand, within MIT1002_00298

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
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319,024 + MIT1002_00296 0.27 +1.0
319,053 - MIT1002_00296 0.30 +1.1
319,082 - MIT1002_00296 0.32 +0.7
319,116 + MIT1002_00296 0.34 -0.8
319,118 + MIT1002_00296 0.35 +0.8
319,126 - MIT1002_00296 0.35 -2.1
319,145 - MIT1002_00296 0.37 -0.6
319,146 + MIT1002_00296 0.37 -1.8
319,146 + MIT1002_00296 0.37 +1.4
319,161 - MIT1002_00296 0.38 -0.6
319,176 - MIT1002_00296 0.39 +1.0
319,223 + MIT1002_00296 0.43 -0.3
319,226 - MIT1002_00296 0.43 +0.0
319,231 - MIT1002_00296 0.43 -1.2
319,236 - MIT1002_00296 0.44 +0.2
319,270 + MIT1002_00296 0.46 +0.1
319,278 - MIT1002_00296 0.47 -1.9
319,295 - MIT1002_00296 0.48 +0.1
319,311 - MIT1002_00296 0.50 -1.2
319,313 + MIT1002_00296 0.50 -3.2
319,322 + MIT1002_00296 0.51 +0.7
319,447 + MIT1002_00296 0.60 -0.1
319,497 - MIT1002_00296 0.64 +1.1
319,502 - MIT1002_00296 0.65 -1.7
319,502 - MIT1002_00296 0.65 -0.6
319,502 - MIT1002_00296 0.65 -1.5
319,523 + MIT1002_00296 0.66 +1.6
319,531 - MIT1002_00296 0.67 +0.6
319,533 + MIT1002_00296 0.67 +0.1
319,601 + MIT1002_00296 0.72 +1.1
319,609 - MIT1002_00296 0.73 +0.7
319,617 - MIT1002_00296 0.74 -0.1
319,719 + MIT1002_00296 0.81 -0.7
319,727 - MIT1002_00296 0.82 +0.4
319,727 - MIT1002_00296 0.82 +0.8
319,804 - MIT1002_00296 0.88 +1.6
319,824 - MIT1002_00296 0.90 -0.6
319,881 - +0.1
319,881 - -0.9
319,883 + -1.0
319,883 + -0.2
319,883 + +1.4
319,891 - -0.1
319,891 - -1.5
319,896 - +0.1
319,936 + -1.7
319,957 - +0.1
320,123 + MIT1002_00297 0.14 +0.9
320,185 - MIT1002_00297 0.19 -2.4
320,223 + MIT1002_00297 0.22 +0.6
320,254 + MIT1002_00297 0.25 -1.1
320,262 - MIT1002_00297 0.26 -2.7
320,288 - MIT1002_00297 0.28 -1.6
320,337 + MIT1002_00297 0.32 +0.7
320,393 - MIT1002_00297 0.37 +0.8
320,396 - MIT1002_00297 0.37 -0.4
320,458 - MIT1002_00297 0.42 -0.0
320,487 - MIT1002_00297 0.45 -1.2
320,487 - MIT1002_00297 0.45 -0.1
320,489 - MIT1002_00297 0.45 -0.2
320,532 - MIT1002_00297 0.49 -1.2
320,628 + MIT1002_00297 0.57 -0.1
320,647 - MIT1002_00297 0.58 +1.2
320,732 - MIT1002_00297 0.65 -4.3
320,739 + MIT1002_00297 0.66 -0.6
320,739 + MIT1002_00297 0.66 -0.3
320,747 - MIT1002_00297 0.67 +0.9
320,747 - MIT1002_00297 0.67 -0.6
320,747 - MIT1002_00297 0.67 -0.8
320,808 + MIT1002_00297 0.72 -0.5
320,816 - MIT1002_00297 0.73 -1.7
320,817 - MIT1002_00297 0.73 -0.6
320,842 + MIT1002_00297 0.75 -0.5
320,890 + MIT1002_00297 0.79 +0.6
320,958 + MIT1002_00297 0.85 -1.3
320,988 + MIT1002_00297 0.87 +0.3
320,989 + MIT1002_00297 0.87 -1.2
321,062 + -0.8
321,134 + -0.1
321,134 + +2.7
321,142 - +0.1
321,142 - -2.8
321,277 - -0.7
321,301 - -1.4
321,306 - -0.8
321,379 - +0.6
321,394 - -0.7
321,405 - -0.7
321,525 + MIT1002_00298 0.12 +1.4
321,586 + MIT1002_00298 0.14 -0.6
321,605 + MIT1002_00298 0.14 -2.9
321,613 - MIT1002_00298 0.15 +0.5
321,630 + MIT1002_00298 0.15 -0.4
321,650 + MIT1002_00298 0.16 -0.2
321,693 - MIT1002_00298 0.17 -0.4
321,719 - MIT1002_00298 0.18 -0.5
321,747 - MIT1002_00298 0.19 +0.3
321,831 - MIT1002_00298 0.22 +1.0
321,831 - MIT1002_00298 0.22 +1.0
321,860 + MIT1002_00298 0.23 -0.0
321,868 - MIT1002_00298 0.23 +0.2
321,890 + MIT1002_00298 0.24 +0.9
321,891 + MIT1002_00298 0.24 +1.6
321,891 + MIT1002_00298 0.24 +0.4
321,891 + MIT1002_00298 0.24 +0.1
321,971 - MIT1002_00298 0.26 +1.1
321,982 + MIT1002_00298 0.27 +0.0
321,982 + MIT1002_00298 0.27 -0.5
322,034 + MIT1002_00298 0.28 +0.2

Or see this region's nucleotide sequence