Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00289

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00287 and MIT1002_00288 are separated by 10 nucleotidesMIT1002_00288 and MIT1002_00289 are separated by 49 nucleotidesMIT1002_00289 and MIT1002_00290 are separated by 75 nucleotidesMIT1002_00290 and MIT1002_00291 are separated by 341 nucleotides MIT1002_00287: MIT1002_00287 - Putative protein-S-isoprenylcysteine methyltransferase, at 311,940 to 312,593 _00287 MIT1002_00288: MIT1002_00288 - hypothetical protein, at 312,604 to 313,056 _00288 MIT1002_00289: MIT1002_00289 - hypothetical protein, at 313,106 to 313,474 _00289 MIT1002_00290: MIT1002_00290 - hypothetical protein, at 313,550 to 313,732 _00290 MIT1002_00291: MIT1002_00291 - Integrase core domain protein, at 314,074 to 314,535 _00291 Position (kb) 313 314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 312.149 kb on - strand, within MIT1002_00287at 312.234 kb on + strand, within MIT1002_00287at 312.242 kb on - strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.300 kb on + strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.308 kb on - strand, within MIT1002_00287at 312.387 kb on - strand, within MIT1002_00287at 312.415 kb on + strand, within MIT1002_00287at 312.415 kb on + strand, within MIT1002_00287at 312.423 kb on + strand, within MIT1002_00287at 312.423 kb on - strand, within MIT1002_00287at 312.423 kb on - strand, within MIT1002_00287at 312.423 kb on - strand, within MIT1002_00287at 312.423 kb on - strand, within MIT1002_00287at 312.494 kb on + strand, within MIT1002_00287at 312.621 kb on - strandat 312.651 kb on - strand, within MIT1002_00288at 312.675 kb on - strand, within MIT1002_00288at 312.712 kb on - strand, within MIT1002_00288at 312.737 kb on + strand, within MIT1002_00288at 312.840 kb on - strand, within MIT1002_00288at 312.865 kb on + strand, within MIT1002_00288at 312.910 kb on - strand, within MIT1002_00288at 312.931 kb on - strand, within MIT1002_00288at 312.931 kb on - strand, within MIT1002_00288at 312.970 kb on + strand, within MIT1002_00288at 313.135 kb on - strandat 313.208 kb on - strand, within MIT1002_00289at 313.278 kb on - strand, within MIT1002_00289at 313.284 kb on + strand, within MIT1002_00289at 313.284 kb on + strand, within MIT1002_00289at 313.292 kb on - strand, within MIT1002_00289at 313.292 kb on - strand, within MIT1002_00289at 313.327 kb on + strand, within MIT1002_00289at 313.428 kb on - strand, within MIT1002_00289at 313.429 kb on - strand, within MIT1002_00289at 313.449 kb on + strandat 313.451 kb on - strandat 313.462 kb on - strandat 313.496 kb on + strandat 313.496 kb on + strandat 313.540 kb on + strandat 313.540 kb on + strandat 313.540 kb on + strandat 313.545 kb on + strandat 313.545 kb on + strandat 313.548 kb on + strandat 313.548 kb on - strandat 313.548 kb on - strandat 313.550 kb on + strandat 313.558 kb on - strandat 313.578 kb on + strand, within MIT1002_00290at 313.578 kb on + strand, within MIT1002_00290at 313.578 kb on + strand, within MIT1002_00290at 313.612 kb on - strand, within MIT1002_00290at 313.620 kb on - strand, within MIT1002_00290at 313.651 kb on - strand, within MIT1002_00290at 313.735 kb on - strandat 313.744 kb on + strandat 313.752 kb on - strandat 313.803 kb on + strandat 313.808 kb on + strandat 313.819 kb on - strandat 313.819 kb on - strandat 313.892 kb on - strandat 313.903 kb on + strandat 313.958 kb on + strandat 313.958 kb on + strandat 314.077 kb on + strandat 314.230 kb on - strand, within MIT1002_00291at 314.255 kb on + strand, within MIT1002_00291at 314.255 kb on + strand, within MIT1002_00291at 314.255 kb on + strand, within MIT1002_00291at 314.262 kb on - strand, within MIT1002_00291at 314.263 kb on - strand, within MIT1002_00291at 314.263 kb on - strand, within MIT1002_00291at 314.275 kb on - strand, within MIT1002_00291at 314.345 kb on + strand, within MIT1002_00291at 314.449 kb on + strand, within MIT1002_00291at 314.472 kb on + strand, within MIT1002_00291at 314.472 kb on + strand, within MIT1002_00291at 314.472 kb on + strand, within MIT1002_00291

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
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312,149 - MIT1002_00287 0.32 +0.3
312,234 + MIT1002_00287 0.45 +2.2
312,242 - MIT1002_00287 0.46 -4.0
312,300 + MIT1002_00287 0.55 -0.0
312,300 + MIT1002_00287 0.55 -0.4
312,300 + MIT1002_00287 0.55 -0.6
312,300 + MIT1002_00287 0.55 -0.9
312,300 + MIT1002_00287 0.55 +0.2
312,300 + MIT1002_00287 0.55 +0.7
312,300 + MIT1002_00287 0.55 -0.2
312,300 + MIT1002_00287 0.55 -0.4
312,300 + MIT1002_00287 0.55 +0.1
312,300 + MIT1002_00287 0.55 -0.2
312,300 + MIT1002_00287 0.55 +0.4
312,300 + MIT1002_00287 0.55 +1.5
312,300 + MIT1002_00287 0.55 +0.5
312,300 + MIT1002_00287 0.55 -0.1
312,300 + MIT1002_00287 0.55 +0.5
312,300 + MIT1002_00287 0.55 +0.2
312,300 + MIT1002_00287 0.55 -0.4
312,300 + MIT1002_00287 0.55 +0.3
312,300 + MIT1002_00287 0.55 -0.1
312,300 + MIT1002_00287 0.55 -0.7
312,300 + MIT1002_00287 0.55 +0.6
312,300 + MIT1002_00287 0.55 +0.8
312,300 + MIT1002_00287 0.55 -0.1
312,300 + MIT1002_00287 0.55 +0.4
312,300 + MIT1002_00287 0.55 +0.0
312,300 + MIT1002_00287 0.55 +0.5
312,300 + MIT1002_00287 0.55 -0.3
312,300 + MIT1002_00287 0.55 -0.0
312,300 + MIT1002_00287 0.55 +0.3
312,300 + MIT1002_00287 0.55 -1.4
312,300 + MIT1002_00287 0.55 -1.1
312,300 + MIT1002_00287 0.55 -0.3
312,300 + MIT1002_00287 0.55 -0.2
312,300 + MIT1002_00287 0.55 -0.8
312,300 + MIT1002_00287 0.55 +0.8
312,300 + MIT1002_00287 0.55 -0.7
312,300 + MIT1002_00287 0.55 -0.9
312,308 - MIT1002_00287 0.56 -0.8
312,308 - MIT1002_00287 0.56 +1.1
312,308 - MIT1002_00287 0.56 +0.3
312,308 - MIT1002_00287 0.56 -2.7
312,308 - MIT1002_00287 0.56 +0.1
312,308 - MIT1002_00287 0.56 +0.3
312,308 - MIT1002_00287 0.56 +0.8
312,308 - MIT1002_00287 0.56 +1.1
312,308 - MIT1002_00287 0.56 +1.8
312,308 - MIT1002_00287 0.56 -2.8
312,308 - MIT1002_00287 0.56 +0.6
312,308 - MIT1002_00287 0.56 -0.1
312,308 - MIT1002_00287 0.56 +1.0
312,308 - MIT1002_00287 0.56 -0.1
312,308 - MIT1002_00287 0.56 -0.8
312,308 - MIT1002_00287 0.56 +0.7
312,308 - MIT1002_00287 0.56 +0.7
312,308 - MIT1002_00287 0.56 +0.4
312,308 - MIT1002_00287 0.56 +0.1
312,308 - MIT1002_00287 0.56 -0.9
312,308 - MIT1002_00287 0.56 -1.1
312,308 - MIT1002_00287 0.56 +2.4
312,308 - MIT1002_00287 0.56 -0.3
312,308 - MIT1002_00287 0.56 +0.1
312,308 - MIT1002_00287 0.56 -2.6
312,308 - MIT1002_00287 0.56 +0.1
312,308 - MIT1002_00287 0.56 -0.1
312,308 - MIT1002_00287 0.56 +0.1
312,308 - MIT1002_00287 0.56 -0.2
312,387 - MIT1002_00287 0.68 +2.0
312,415 + MIT1002_00287 0.73 +0.3
312,415 + MIT1002_00287 0.73 -0.3
312,423 + MIT1002_00287 0.74 +0.3
312,423 - MIT1002_00287 0.74 +2.8
312,423 - MIT1002_00287 0.74 +0.1
312,423 - MIT1002_00287 0.74 +0.0
312,423 - MIT1002_00287 0.74 +0.0
312,494 + MIT1002_00287 0.85 -2.1
312,621 - +0.6
312,651 - MIT1002_00288 0.10 -2.1
312,675 - MIT1002_00288 0.16 +0.1
312,712 - MIT1002_00288 0.24 +1.7
312,737 + MIT1002_00288 0.29 -0.3
312,840 - MIT1002_00288 0.52 -1.0
312,865 + MIT1002_00288 0.58 -0.0
312,910 - MIT1002_00288 0.68 +0.3
312,931 - MIT1002_00288 0.72 +0.5
312,931 - MIT1002_00288 0.72 +0.3
312,970 + MIT1002_00288 0.81 +0.2
313,135 - -0.5
313,208 - MIT1002_00289 0.28 +0.9
313,278 - MIT1002_00289 0.47 -1.8
313,284 + MIT1002_00289 0.48 -0.0
313,284 + MIT1002_00289 0.48 -0.5
313,292 - MIT1002_00289 0.50 -0.7
313,292 - MIT1002_00289 0.50 -0.2
313,327 + MIT1002_00289 0.60 -0.3
313,428 - MIT1002_00289 0.87 -0.3
313,429 - MIT1002_00289 0.88 -0.0
313,449 + -0.1
313,451 - +1.0
313,462 - -0.3
313,496 + +0.6
313,496 + +0.5
313,540 + +0.6
313,540 + +0.9
313,540 + -3.1
313,545 + +0.9
313,545 + +0.5
313,548 + -0.9
313,548 - +0.6
313,548 - +1.0
313,550 + -0.8
313,558 - -1.3
313,578 + MIT1002_00290 0.15 +1.1
313,578 + MIT1002_00290 0.15 +0.3
313,578 + MIT1002_00290 0.15 -0.3
313,612 - MIT1002_00290 0.34 +0.5
313,620 - MIT1002_00290 0.38 +0.4
313,651 - MIT1002_00290 0.55 -0.3
313,735 - -0.3
313,744 + +1.3
313,752 - +0.9
313,803 + +1.4
313,808 + -1.2
313,819 - -1.5
313,819 - -0.5
313,892 - -0.9
313,903 + -1.2
313,958 + +0.5
313,958 + +0.6
314,077 + -0.7
314,230 - MIT1002_00291 0.34 -1.6
314,255 + MIT1002_00291 0.39 +1.4
314,255 + MIT1002_00291 0.39 -0.3
314,255 + MIT1002_00291 0.39 +0.4
314,262 - MIT1002_00291 0.41 -3.1
314,263 - MIT1002_00291 0.41 +0.2
314,263 - MIT1002_00291 0.41 +0.8
314,275 - MIT1002_00291 0.44 +0.8
314,345 + MIT1002_00291 0.59 +2.3
314,449 + MIT1002_00291 0.81 +0.8
314,472 + MIT1002_00291 0.86 +0.3
314,472 + MIT1002_00291 0.86 +0.2
314,472 + MIT1002_00291 0.86 -2.6

Or see this region's nucleotide sequence