Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00278

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00275 and MIT1002_00276 are separated by 18 nucleotidesMIT1002_00276 and MIT1002_00277 overlap by 1 nucleotidesMIT1002_00277 and MIT1002_00278 overlap by 8 nucleotidesMIT1002_00278 and MIT1002_00279 overlap by 11 nucleotidesMIT1002_00279 and MIT1002_00280 are separated by 6 nucleotides MIT1002_00275: MIT1002_00275 - Hydrogenase-1 large chain, at 300,361 to 302,238 _00275 MIT1002_00276: MIT1002_00276 - hypothetical protein, at 302,257 to 302,472 _00276 MIT1002_00277: MIT1002_00277 - Hydrogenase isoenzymes formation protein HypC, at 302,472 to 302,699 _00277 MIT1002_00278: MIT1002_00278 - hydrogenase nickel incorporation protein, at 302,692 to 303,078 _00278 MIT1002_00279: MIT1002_00279 - Hydrogenase isoenzymes nickel incorporation protein HypB, at 303,068 to 303,814 _00279 MIT1002_00280: MIT1002_00280 - Hydrogenase isoenzymes formation protein HypD, at 303,821 to 304,954 _00280 Position (kb) 302 303 304Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 301.728 kb on - strand, within MIT1002_00275at 301.728 kb on - strand, within MIT1002_00275at 301.728 kb on - strand, within MIT1002_00275at 301.728 kb on - strand, within MIT1002_00275at 301.800 kb on + strand, within MIT1002_00275at 301.842 kb on + strand, within MIT1002_00275at 301.850 kb on - strand, within MIT1002_00275at 301.850 kb on - strand, within MIT1002_00275at 301.893 kb on + strand, within MIT1002_00275at 301.893 kb on + strand, within MIT1002_00275at 301.901 kb on - strand, within MIT1002_00275at 301.901 kb on - strand, within MIT1002_00275at 301.907 kb on + strand, within MIT1002_00275at 301.943 kb on + strand, within MIT1002_00275at 301.951 kb on - strand, within MIT1002_00275at 302.103 kb on - strandat 302.159 kb on + strandat 302.166 kb on + strandat 302.171 kb on + strandat 302.182 kb on + strandat 302.513 kb on + strand, within MIT1002_00277at 302.539 kb on - strand, within MIT1002_00277at 302.575 kb on + strand, within MIT1002_00277at 302.583 kb on - strand, within MIT1002_00277at 302.659 kb on + strand, within MIT1002_00277at 302.667 kb on - strand, within MIT1002_00277at 302.678 kb on + strandat 302.678 kb on + strandat 302.686 kb on - strandat 302.737 kb on + strand, within MIT1002_00278at 302.743 kb on - strand, within MIT1002_00278at 302.779 kb on - strand, within MIT1002_00278at 302.846 kb on - strand, within MIT1002_00278at 302.882 kb on - strand, within MIT1002_00278at 302.996 kb on - strand, within MIT1002_00278at 303.027 kb on + strand, within MIT1002_00278at 303.050 kb on + strandat 303.058 kb on - strandat 303.135 kb on + strandat 303.180 kb on - strand, within MIT1002_00279at 303.213 kb on + strand, within MIT1002_00279at 303.239 kb on + strand, within MIT1002_00279at 303.239 kb on + strand, within MIT1002_00279at 303.276 kb on + strand, within MIT1002_00279at 303.373 kb on + strand, within MIT1002_00279at 303.392 kb on + strand, within MIT1002_00279at 303.392 kb on + strand, within MIT1002_00279at 303.392 kb on + strand, within MIT1002_00279at 303.392 kb on + strand, within MIT1002_00279at 303.392 kb on + strand, within MIT1002_00279at 303.398 kb on + strand, within MIT1002_00279at 303.400 kb on - strand, within MIT1002_00279at 303.400 kb on - strand, within MIT1002_00279at 303.400 kb on - strand, within MIT1002_00279at 303.400 kb on - strand, within MIT1002_00279at 303.400 kb on - strand, within MIT1002_00279at 303.400 kb on - strand, within MIT1002_00279at 303.400 kb on - strand, within MIT1002_00279at 303.400 kb on - strand, within MIT1002_00279at 303.420 kb on - strand, within MIT1002_00279at 303.544 kb on + strand, within MIT1002_00279at 303.552 kb on - strand, within MIT1002_00279at 303.784 kb on + strandat 303.809 kb on + strandat 303.816 kb on + strandat 303.817 kb on - strandat 303.817 kb on - strandat 303.820 kb on + strandat 303.826 kb on - strandat 303.826 kb on - strandat 303.828 kb on + strandat 303.831 kb on - strandat 303.836 kb on - strandat 303.902 kb on + strandat 303.902 kb on + strandat 303.902 kb on + strandat 304.027 kb on - strand, within MIT1002_00280at 304.075 kb on - strand, within MIT1002_00280

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
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301,728 - MIT1002_00275 0.73 +0.9
301,728 - MIT1002_00275 0.73 +0.3
301,728 - MIT1002_00275 0.73 +0.5
301,728 - MIT1002_00275 0.73 +1.3
301,800 + MIT1002_00275 0.77 -0.9
301,842 + MIT1002_00275 0.79 +2.4
301,850 - MIT1002_00275 0.79 +0.2
301,850 - MIT1002_00275 0.79 +1.3
301,893 + MIT1002_00275 0.82 +0.0
301,893 + MIT1002_00275 0.82 +0.7
301,901 - MIT1002_00275 0.82 +1.4
301,901 - MIT1002_00275 0.82 -0.2
301,907 + MIT1002_00275 0.82 +1.0
301,943 + MIT1002_00275 0.84 +0.5
301,951 - MIT1002_00275 0.85 +0.5
302,103 - -2.8
302,159 + +1.2
302,166 + +0.9
302,171 + +0.3
302,182 + +2.5
302,513 + MIT1002_00277 0.18 -0.0
302,539 - MIT1002_00277 0.29 +0.3
302,575 + MIT1002_00277 0.45 +0.4
302,583 - MIT1002_00277 0.49 -2.7
302,659 + MIT1002_00277 0.82 +1.4
302,667 - MIT1002_00277 0.86 -0.2
302,678 + -1.7
302,678 + -0.4
302,686 - -0.3
302,737 + MIT1002_00278 0.12 +0.6
302,743 - MIT1002_00278 0.13 +2.0
302,779 - MIT1002_00278 0.22 -0.1
302,846 - MIT1002_00278 0.40 +0.3
302,882 - MIT1002_00278 0.49 +0.1
302,996 - MIT1002_00278 0.79 +0.7
303,027 + MIT1002_00278 0.87 -0.4
303,050 + -0.1
303,058 - -0.2
303,135 + +0.9
303,180 - MIT1002_00279 0.15 +0.3
303,213 + MIT1002_00279 0.19 -0.8
303,239 + MIT1002_00279 0.23 -0.2
303,239 + MIT1002_00279 0.23 -2.8
303,276 + MIT1002_00279 0.28 -1.5
303,373 + MIT1002_00279 0.41 -3.0
303,392 + MIT1002_00279 0.43 +0.3
303,392 + MIT1002_00279 0.43 +0.2
303,392 + MIT1002_00279 0.43 +0.2
303,392 + MIT1002_00279 0.43 +0.5
303,392 + MIT1002_00279 0.43 -2.3
303,398 + MIT1002_00279 0.44 +0.4
303,400 - MIT1002_00279 0.44 -0.5
303,400 - MIT1002_00279 0.44 -0.3
303,400 - MIT1002_00279 0.44 +0.8
303,400 - MIT1002_00279 0.44 -0.4
303,400 - MIT1002_00279 0.44 +0.5
303,400 - MIT1002_00279 0.44 +0.7
303,400 - MIT1002_00279 0.44 +0.7
303,400 - MIT1002_00279 0.44 -0.6
303,420 - MIT1002_00279 0.47 +1.0
303,544 + MIT1002_00279 0.64 +0.3
303,552 - MIT1002_00279 0.65 -0.7
303,784 + +0.1
303,809 + -0.7
303,816 + +1.2
303,817 - -0.5
303,817 - +0.3
303,820 + +0.8
303,826 - -0.2
303,826 - +0.3
303,828 + -2.5
303,831 - +0.7
303,836 - +1.7
303,902 + +1.6
303,902 + -2.7
303,902 + -0.9
304,027 - MIT1002_00280 0.18 +0.3
304,075 - MIT1002_00280 0.22 -1.4

Or see this region's nucleotide sequence