Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00046

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00044 and MIT1002_00045 are separated by 38 nucleotidesMIT1002_00045 and MIT1002_00046 are separated by 218 nucleotidesMIT1002_00046 and MIT1002_00047 are separated by 256 nucleotidesMIT1002_00047 and MIT1002_00048 are separated by 115 nucleotides MIT1002_00044: MIT1002_00044 - hypothetical protein, at 49,386 to 51,137 _00044 MIT1002_00045: MIT1002_00045 - hypothetical protein, at 51,176 to 51,511 _00045 MIT1002_00046: MIT1002_00046 - Bacterial leucyl aminopeptidase precursor, at 51,730 to 53,337 _00046 MIT1002_00047: MIT1002_00047 - Synthetically lethal with a defective Min system protein A, at 53,594 to 54,181 _00047 MIT1002_00048: MIT1002_00048 - DNA/pantothenate metabolism flavoprotein, at 54,297 to 55,526 _00048 Position (kb) 51 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 50.758 kb on - strand, within MIT1002_00044at 50.766 kb on + strand, within MIT1002_00044at 50.865 kb on - strand, within MIT1002_00044at 50.865 kb on - strand, within MIT1002_00044at 50.869 kb on + strand, within MIT1002_00044at 50.902 kb on - strand, within MIT1002_00044at 50.903 kb on - strand, within MIT1002_00044at 50.904 kb on + strand, within MIT1002_00044at 50.990 kb on - strandat 51.040 kb on - strandat 51.048 kb on - strandat 51.078 kb on - strandat 51.088 kb on + strandat 51.134 kb on + strandat 51.134 kb on + strandat 51.142 kb on - strandat 51.142 kb on - strandat 51.206 kb on + strandat 51.430 kb on + strand, within MIT1002_00045at 51.430 kb on + strand, within MIT1002_00045at 51.438 kb on - strand, within MIT1002_00045at 51.438 kb on - strand, within MIT1002_00045at 51.545 kb on + strandat 51.631 kb on - strandat 51.641 kb on - strandat 51.641 kb on - strandat 51.669 kb on + strandat 51.679 kb on + strandat 51.743 kb on + strandat 51.757 kb on + strandat 51.757 kb on + strandat 51.765 kb on - strandat 51.765 kb on - strandat 51.765 kb on - strandat 51.765 kb on - strandat 51.896 kb on - strand, within MIT1002_00046at 52.048 kb on - strand, within MIT1002_00046at 52.058 kb on - strand, within MIT1002_00046at 52.069 kb on - strand, within MIT1002_00046at 52.122 kb on - strand, within MIT1002_00046at 52.225 kb on - strand, within MIT1002_00046at 52.242 kb on - strand, within MIT1002_00046at 52.322 kb on + strand, within MIT1002_00046at 52.323 kb on + strand, within MIT1002_00046at 52.328 kb on + strand, within MIT1002_00046at 52.333 kb on + strand, within MIT1002_00046at 52.341 kb on - strand, within MIT1002_00046at 52.356 kb on - strand, within MIT1002_00046at 52.376 kb on + strand, within MIT1002_00046at 52.384 kb on - strand, within MIT1002_00046at 52.384 kb on - strand, within MIT1002_00046at 52.393 kb on - strand, within MIT1002_00046at 52.393 kb on - strand, within MIT1002_00046at 52.424 kb on - strand, within MIT1002_00046at 52.424 kb on - strand, within MIT1002_00046at 52.424 kb on - strand, within MIT1002_00046at 52.450 kb on + strand, within MIT1002_00046at 52.501 kb on - strand, within MIT1002_00046at 52.522 kb on + strand, within MIT1002_00046at 52.527 kb on - strand, within MIT1002_00046at 52.527 kb on - strand, within MIT1002_00046at 52.534 kb on + strand, within MIT1002_00046at 52.537 kb on - strand, within MIT1002_00046at 52.589 kb on + strand, within MIT1002_00046at 52.624 kb on - strand, within MIT1002_00046at 52.660 kb on + strand, within MIT1002_00046at 52.680 kb on + strand, within MIT1002_00046at 52.749 kb on + strand, within MIT1002_00046at 52.770 kb on - strand, within MIT1002_00046at 52.802 kb on - strand, within MIT1002_00046at 52.883 kb on + strand, within MIT1002_00046at 52.883 kb on + strand, within MIT1002_00046at 52.883 kb on + strand, within MIT1002_00046at 52.891 kb on - strand, within MIT1002_00046at 52.977 kb on - strand, within MIT1002_00046at 53.017 kb on - strand, within MIT1002_00046at 53.021 kb on + strand, within MIT1002_00046at 53.028 kb on + strand, within MIT1002_00046at 53.028 kb on + strand, within MIT1002_00046at 53.028 kb on + strand, within MIT1002_00046at 53.028 kb on + strand, within MIT1002_00046at 53.029 kb on - strand, within MIT1002_00046at 53.029 kb on - strand, within MIT1002_00046at 53.029 kb on - strand, within MIT1002_00046at 53.036 kb on - strand, within MIT1002_00046at 53.038 kb on + strand, within MIT1002_00046at 53.041 kb on - strand, within MIT1002_00046at 53.052 kb on - strand, within MIT1002_00046at 53.065 kb on + strand, within MIT1002_00046at 53.138 kb on - strand, within MIT1002_00046at 53.144 kb on + strand, within MIT1002_00046at 53.144 kb on + strand, within MIT1002_00046at 53.152 kb on - strand, within MIT1002_00046at 53.163 kb on + strand, within MIT1002_00046at 53.163 kb on + strand, within MIT1002_00046at 53.163 kb on + strand, within MIT1002_00046at 53.171 kb on - strand, within MIT1002_00046at 53.171 kb on - strand, within MIT1002_00046at 53.171 kb on - strand, within MIT1002_00046at 53.171 kb on - strand, within MIT1002_00046at 53.171 kb on - strand, within MIT1002_00046at 53.180 kb on + strandat 53.180 kb on + strandat 53.181 kb on + strandat 53.188 kb on - strandat 53.188 kb on - strandat 53.188 kb on - strandat 53.188 kb on - strandat 53.232 kb on + strandat 53.241 kb on - strandat 53.261 kb on + strandat 53.297 kb on - strandat 53.434 kb on + strandat 53.570 kb on + strandat 53.570 kb on - strandat 54.246 kb on - strandat 54.246 kb on - strandat 54.324 kb on - strandat 54.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
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50,758 - MIT1002_00044 0.78 +1.2
50,766 + MIT1002_00044 0.79 -2.3
50,865 - MIT1002_00044 0.84 -0.1
50,865 - MIT1002_00044 0.84 +0.7
50,869 + MIT1002_00044 0.85 -1.4
50,902 - MIT1002_00044 0.87 +0.5
50,903 - MIT1002_00044 0.87 +1.1
50,904 + MIT1002_00044 0.87 -2.2
50,990 - -0.6
51,040 - +1.8
51,048 - +1.4
51,078 - +0.3
51,088 + +0.2
51,134 + -0.5
51,134 + +0.8
51,142 - -0.3
51,142 - -0.7
51,206 + -1.2
51,430 + MIT1002_00045 0.76 -0.0
51,430 + MIT1002_00045 0.76 -2.2
51,438 - MIT1002_00045 0.78 -1.1
51,438 - MIT1002_00045 0.78 -0.3
51,545 + +0.5
51,631 - -0.3
51,641 - -0.4
51,641 - +1.4
51,669 + -0.3
51,679 + +0.2
51,743 + +1.3
51,757 + +0.5
51,757 + -0.5
51,765 - +0.2
51,765 - +0.7
51,765 - +1.8
51,765 - -0.7
51,896 - MIT1002_00046 0.10 -0.1
52,048 - MIT1002_00046 0.20 +0.3
52,058 - MIT1002_00046 0.20 -1.1
52,069 - MIT1002_00046 0.21 +0.3
52,122 - MIT1002_00046 0.24 -1.6
52,225 - MIT1002_00046 0.31 +0.1
52,242 - MIT1002_00046 0.32 +2.0
52,322 + MIT1002_00046 0.37 -0.7
52,323 + MIT1002_00046 0.37 +0.1
52,328 + MIT1002_00046 0.37 +0.3
52,333 + MIT1002_00046 0.38 +0.3
52,341 - MIT1002_00046 0.38 +1.3
52,356 - MIT1002_00046 0.39 +0.1
52,376 + MIT1002_00046 0.40 +0.2
52,384 - MIT1002_00046 0.41 -0.3
52,384 - MIT1002_00046 0.41 -0.7
52,393 - MIT1002_00046 0.41 +0.4
52,393 - MIT1002_00046 0.41 +0.8
52,424 - MIT1002_00046 0.43 +0.1
52,424 - MIT1002_00046 0.43 +0.6
52,424 - MIT1002_00046 0.43 -0.1
52,450 + MIT1002_00046 0.45 -0.4
52,501 - MIT1002_00046 0.48 +1.0
52,522 + MIT1002_00046 0.49 -0.3
52,527 - MIT1002_00046 0.50 +1.6
52,527 - MIT1002_00046 0.50 -1.9
52,534 + MIT1002_00046 0.50 +2.3
52,537 - MIT1002_00046 0.50 -0.9
52,589 + MIT1002_00046 0.53 +0.5
52,624 - MIT1002_00046 0.56 +2.1
52,660 + MIT1002_00046 0.58 +0.6
52,680 + MIT1002_00046 0.59 +0.5
52,749 + MIT1002_00046 0.63 -0.5
52,770 - MIT1002_00046 0.65 -0.2
52,802 - MIT1002_00046 0.67 +1.7
52,883 + MIT1002_00046 0.72 +0.6
52,883 + MIT1002_00046 0.72 +0.9
52,883 + MIT1002_00046 0.72 -0.3
52,891 - MIT1002_00046 0.72 +0.6
52,977 - MIT1002_00046 0.78 -1.4
53,017 - MIT1002_00046 0.80 +1.3
53,021 + MIT1002_00046 0.80 -0.6
53,028 + MIT1002_00046 0.81 -1.4
53,028 + MIT1002_00046 0.81 +0.3
53,028 + MIT1002_00046 0.81 -0.3
53,028 + MIT1002_00046 0.81 +1.7
53,029 - MIT1002_00046 0.81 +0.9
53,029 - MIT1002_00046 0.81 +0.5
53,029 - MIT1002_00046 0.81 +0.9
53,036 - MIT1002_00046 0.81 -0.3
53,038 + MIT1002_00046 0.81 -3.3
53,041 - MIT1002_00046 0.82 +0.1
53,052 - MIT1002_00046 0.82 +1.0
53,065 + MIT1002_00046 0.83 +1.9
53,138 - MIT1002_00046 0.88 +0.0
53,144 + MIT1002_00046 0.88 -0.0
53,144 + MIT1002_00046 0.88 +1.0
53,152 - MIT1002_00046 0.88 -0.7
53,163 + MIT1002_00046 0.89 -0.7
53,163 + MIT1002_00046 0.89 -0.3
53,163 + MIT1002_00046 0.89 +1.0
53,171 - MIT1002_00046 0.90 +0.1
53,171 - MIT1002_00046 0.90 +0.9
53,171 - MIT1002_00046 0.90 +0.8
53,171 - MIT1002_00046 0.90 -0.9
53,171 - MIT1002_00046 0.90 +0.3
53,180 + -1.1
53,180 + -0.2
53,181 + -0.6
53,188 - -0.5
53,188 - +0.7
53,188 - +0.8
53,188 - +0.7
53,232 + -3.7
53,241 - +2.3
53,261 + -1.4
53,297 - -0.6
53,434 + -0.0
53,570 + +2.3
53,570 - +0.2
54,246 - +0.6
54,246 - -0.8
54,324 - -0.7
54,324 - +0.4

Or see this region's nucleotide sequence