Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44645

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS44640 and QEN71_RS44645 are separated by 722 nucleotidesQEN71_RS44645 and QEN71_RS44650 are separated by 78 nucleotides QEN71_RS44640: QEN71_RS44640 - transposase, at 394,033 to 394,503 _RS44640 QEN71_RS44645: QEN71_RS44645 - IS5/IS1182 family transposase, at 395,226 to 395,362 _RS44645 QEN71_RS44650: QEN71_RS44650 - IS5 family transposase, at 395,441 to 396,247 _RS44650 Position (kb) 395 396Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 394.446 kb on + strand, within QEN71_RS44640at 394.446 kb on + strand, within QEN71_RS44640at 394.528 kb on + strandat 394.528 kb on + strandat 394.528 kb on + strandat 394.529 kb on - strandat 394.529 kb on - strandat 394.529 kb on - strandat 394.546 kb on - strandat 394.554 kb on + strandat 394.573 kb on + strandat 394.574 kb on - strandat 394.660 kb on + strandat 394.661 kb on - strandat 394.759 kb on - strandat 394.853 kb on + strandat 394.853 kb on + strandat 394.853 kb on + strandat 394.853 kb on + strandat 394.854 kb on - strandat 394.854 kb on - strandat 394.854 kb on - strandat 394.916 kb on + strandat 394.916 kb on + strandat 394.924 kb on + strandat 394.924 kb on + strandat 394.924 kb on + strandat 394.925 kb on - strandat 394.925 kb on - strandat 394.925 kb on - strandat 394.925 kb on - strandat 394.925 kb on - strandat 394.925 kb on - strandat 394.925 kb on - strandat 394.926 kb on + strandat 394.935 kb on + strandat 394.967 kb on + strandat 394.968 kb on - strandat 394.968 kb on - strandat 395.029 kb on + strandat 395.029 kb on + strandat 395.030 kb on - strandat 395.076 kb on - strandat 395.085 kb on + strandat 395.085 kb on + strandat 395.096 kb on + strandat 395.096 kb on + strandat 395.096 kb on + strandat 395.096 kb on + strandat 395.096 kb on + strandat 395.103 kb on + strandat 395.103 kb on + strandat 395.194 kb on + strandat 395.195 kb on - strandat 395.208 kb on + strandat 395.209 kb on - strandat 395.209 kb on - strandat 395.335 kb on + strand, within QEN71_RS44645at 395.335 kb on + strand, within QEN71_RS44645at 395.336 kb on - strand, within QEN71_RS44645at 395.377 kb on + strandat 396.208 kb on + strandat 396.208 kb on + strandat 396.208 kb on + strandat 396.255 kb on + strandat 396.256 kb on - strandat 396.313 kb on + strandat 396.313 kb on + strandat 396.313 kb on + strandat 396.314 kb on - strandat 396.315 kb on + strandat 396.315 kb on + strandat 396.315 kb on + strandat 396.316 kb on - strandat 396.316 kb on - strandat 396.316 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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394,446 + QEN71_RS44640 0.88 +0.8
394,446 + QEN71_RS44640 0.88 +0.3
394,528 + -0.9
394,528 + -0.9
394,528 + -0.7
394,529 - +1.2
394,529 - -0.8
394,529 - -2.2
394,546 - +0.5
394,554 + -0.7
394,573 + +0.7
394,574 - +0.5
394,660 + -1.1
394,661 - -0.4
394,759 - -2.1
394,853 + +0.2
394,853 + +0.7
394,853 + +0.6
394,853 + -0.8
394,854 - -0.1
394,854 - +0.1
394,854 - +1.3
394,916 + -1.3
394,916 + +3.1
394,924 + -2.5
394,924 + -0.8
394,924 + -0.4
394,925 - -0.2
394,925 - -0.7
394,925 - +1.7
394,925 - +0.5
394,925 - +0.9
394,925 - +0.5
394,925 - +0.9
394,926 + -1.8
394,935 + -0.9
394,967 + -0.8
394,968 - +0.3
394,968 - -0.4
395,029 + +0.8
395,029 + -0.6
395,030 - -0.3
395,076 - -0.2
395,085 + -0.7
395,085 + -0.8
395,096 + -0.6
395,096 + -1.0
395,096 + +0.8
395,096 + +0.3
395,096 + +1.1
395,103 + -0.4
395,103 + -2.3
395,194 + -2.8
395,195 - -1.2
395,208 + -1.5
395,209 - -0.7
395,209 - +1.0
395,335 + QEN71_RS44645 0.80 +0.8
395,335 + QEN71_RS44645 0.80 -0.9
395,336 - QEN71_RS44645 0.80 +0.7
395,377 + -0.8
396,208 + -1.7
396,208 + -1.1
396,208 + -0.0
396,255 + -0.2
396,256 - -0.5
396,313 + -1.0
396,313 + -0.9
396,313 + +0.4
396,314 - +1.2
396,315 + -0.9
396,315 + -0.4
396,315 + -0.2
396,316 - +0.6
396,316 - -0.5
396,316 - -0.2

Or see this region's nucleotide sequence