Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS42760

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS42745 and QEN71_RS42750 are separated by 52 nucleotidesQEN71_RS42750 and QEN71_RS42755 are separated by 166 nucleotidesQEN71_RS42755 and QEN71_RS42760 are separated by 35 nucleotidesQEN71_RS42760 and QEN71_RS42765 are separated by 16 nucleotides QEN71_RS42745: QEN71_RS42745 - ATP-binding protein, at 30,458 to 30,616 _RS42745 QEN71_RS42750: QEN71_RS42750 - tyrosine-type recombinase/integrase, at 30,669 to 31,307 _RS42750 QEN71_RS42755: QEN71_RS42755 - IS3 family transposase, at 31,474 to 31,557 _RS42755 QEN71_RS42760: QEN71_RS42760 - transposase domain-containing protein, at 31,593 to 31,799 _RS42760 QEN71_RS42765: QEN71_RS42765 - IS5 family transposase, at 31,816 to 32,628 _RS42765 Position (kb) 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 30.635 kb on + strandat 30.701 kb on + strandat 30.726 kb on + strandat 30.726 kb on + strandat 30.821 kb on - strand, within QEN71_RS42750at 30.911 kb on + strand, within QEN71_RS42750at 30.911 kb on + strand, within QEN71_RS42750at 30.911 kb on + strand, within QEN71_RS42750at 30.912 kb on - strand, within QEN71_RS42750at 30.990 kb on + strand, within QEN71_RS42750at 31.019 kb on + strand, within QEN71_RS42750at 31.020 kb on - strand, within QEN71_RS42750at 31.020 kb on - strand, within QEN71_RS42750at 31.020 kb on - strand, within QEN71_RS42750at 31.020 kb on - strand, within QEN71_RS42750at 31.165 kb on + strand, within QEN71_RS42750at 31.187 kb on + strand, within QEN71_RS42750at 31.296 kb on + strandat 31.409 kb on + strandat 31.429 kb on + strandat 31.429 kb on + strandat 31.429 kb on + strandat 31.493 kb on + strand, within QEN71_RS42755at 31.530 kb on + strand, within QEN71_RS42755at 31.531 kb on - strand, within QEN71_RS42755at 31.531 kb on - strand, within QEN71_RS42755at 31.544 kb on + strand, within QEN71_RS42755at 31.544 kb on + strand, within QEN71_RS42755at 31.545 kb on - strand, within QEN71_RS42755at 31.545 kb on - strand, within QEN71_RS42755at 31.561 kb on - strandat 31.561 kb on - strandat 31.561 kb on - strandat 31.805 kb on - strandat 31.808 kb on - strandat 31.832 kb on - strandat 32.662 kb on + strandat 32.769 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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30,635 + -0.4
30,701 + +0.9
30,726 + -0.2
30,726 + -0.7
30,821 - QEN71_RS42750 0.24 +0.1
30,911 + QEN71_RS42750 0.38 +0.2
30,911 + QEN71_RS42750 0.38 -2.0
30,911 + QEN71_RS42750 0.38 +0.9
30,912 - QEN71_RS42750 0.38 -0.3
30,990 + QEN71_RS42750 0.50 -0.4
31,019 + QEN71_RS42750 0.55 +0.8
31,020 - QEN71_RS42750 0.55 -2.6
31,020 - QEN71_RS42750 0.55 -0.7
31,020 - QEN71_RS42750 0.55 +0.5
31,020 - QEN71_RS42750 0.55 -2.1
31,165 + QEN71_RS42750 0.78 +1.1
31,187 + QEN71_RS42750 0.81 +1.1
31,296 + +2.4
31,409 + +0.0
31,429 + -0.9
31,429 + +1.5
31,429 + -1.1
31,493 + QEN71_RS42755 0.23 -0.3
31,530 + QEN71_RS42755 0.67 -2.2
31,531 - QEN71_RS42755 0.68 +2.1
31,531 - QEN71_RS42755 0.68 -0.8
31,544 + QEN71_RS42755 0.83 -1.1
31,544 + QEN71_RS42755 0.83 +0.4
31,545 - QEN71_RS42755 0.85 -2.0
31,545 - QEN71_RS42755 0.85 -1.0
31,561 - -1.7
31,561 - +0.1
31,561 - +2.0
31,805 - +0.9
31,808 - +0.9
31,832 - +2.4
32,662 + -0.4
32,769 + -0.5

Or see this region's nucleotide sequence