Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS40730

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS40725 and QEN71_RS40730 are separated by 494 nucleotidesQEN71_RS40730 and QEN71_RS40735 are separated by 46 nucleotides QEN71_RS40725: QEN71_RS40725 - hypothetical protein, at 204,581 to 205,297 _RS40725 QEN71_RS40730: QEN71_RS40730 - lipopolysaccharide biosynthesis protein, at 205,792 to 207,117 _RS40730 QEN71_RS40735: QEN71_RS40735 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 207,164 to 208,411 _RS40735 Position (kb) 205 206 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 204.814 kb on - strand, within QEN71_RS40725at 204.854 kb on - strand, within QEN71_RS40725at 204.866 kb on + strand, within QEN71_RS40725at 205.117 kb on + strand, within QEN71_RS40725at 205.118 kb on - strand, within QEN71_RS40725at 205.120 kb on - strand, within QEN71_RS40725at 205.120 kb on - strand, within QEN71_RS40725at 205.120 kb on - strand, within QEN71_RS40725at 205.314 kb on - strandat 205.314 kb on - strandat 205.378 kb on - strandat 205.510 kb on + strandat 205.510 kb on + strandat 205.510 kb on + strandat 205.511 kb on - strandat 205.511 kb on - strandat 205.511 kb on - strandat 205.511 kb on - strandat 205.552 kb on - strandat 205.576 kb on + strandat 205.576 kb on + strandat 205.668 kb on - strandat 205.714 kb on + strandat 205.714 kb on + strandat 205.715 kb on - strandat 205.715 kb on - strandat 205.772 kb on + strandat 205.773 kb on - strandat 205.801 kb on + strandat 205.801 kb on + strandat 205.820 kb on - strandat 205.899 kb on + strandat 205.899 kb on + strandat 205.899 kb on + strandat 205.899 kb on + strandat 205.900 kb on - strandat 206.025 kb on - strand, within QEN71_RS40730at 206.025 kb on - strand, within QEN71_RS40730at 206.057 kb on - strand, within QEN71_RS40730at 206.057 kb on - strand, within QEN71_RS40730at 206.247 kb on + strand, within QEN71_RS40730at 206.310 kb on - strand, within QEN71_RS40730at 206.419 kb on + strand, within QEN71_RS40730at 206.442 kb on + strand, within QEN71_RS40730at 206.444 kb on + strand, within QEN71_RS40730at 206.463 kb on + strand, within QEN71_RS40730at 206.463 kb on + strand, within QEN71_RS40730at 206.464 kb on - strand, within QEN71_RS40730at 206.464 kb on - strand, within QEN71_RS40730at 206.464 kb on - strand, within QEN71_RS40730at 206.464 kb on - strand, within QEN71_RS40730at 206.465 kb on + strand, within QEN71_RS40730at 206.465 kb on + strand, within QEN71_RS40730at 206.466 kb on - strand, within QEN71_RS40730at 206.466 kb on - strand, within QEN71_RS40730at 206.466 kb on - strand, within QEN71_RS40730at 206.466 kb on - strand, within QEN71_RS40730at 206.481 kb on + strand, within QEN71_RS40730at 206.775 kb on + strand, within QEN71_RS40730at 206.880 kb on - strand, within QEN71_RS40730at 206.936 kb on - strand, within QEN71_RS40730at 206.939 kb on + strand, within QEN71_RS40730at 206.940 kb on - strand, within QEN71_RS40730at 206.940 kb on - strand, within QEN71_RS40730at 206.943 kb on + strand, within QEN71_RS40730at 206.943 kb on + strand, within QEN71_RS40730at 206.943 kb on + strand, within QEN71_RS40730at 206.944 kb on - strand, within QEN71_RS40730at 206.992 kb on + strandat 206.993 kb on - strandat 206.993 kb on - strandat 207.000 kb on - strandat 207.097 kb on + strandat 207.097 kb on + strandat 207.098 kb on - strandat 207.143 kb on - strandat 207.193 kb on + strandat 207.225 kb on - strandat 207.306 kb on - strand, within QEN71_RS40735at 207.306 kb on - strand, within QEN71_RS40735at 207.306 kb on - strand, within QEN71_RS40735at 207.356 kb on + strand, within QEN71_RS40735at 207.519 kb on + strand, within QEN71_RS40735at 207.519 kb on + strand, within QEN71_RS40735at 207.519 kb on + strand, within QEN71_RS40735at 207.520 kb on - strand, within QEN71_RS40735at 207.520 kb on - strand, within QEN71_RS40735at 207.520 kb on - strand, within QEN71_RS40735at 207.746 kb on - strand, within QEN71_RS40735at 207.749 kb on + strand, within QEN71_RS40735at 207.824 kb on + strand, within QEN71_RS40735at 207.825 kb on - strand, within QEN71_RS40735at 208.084 kb on + strand, within QEN71_RS40735at 208.084 kb on + strand, within QEN71_RS40735

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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204,814 - QEN71_RS40725 0.32 -1.5
204,854 - QEN71_RS40725 0.38 -0.5
204,866 + QEN71_RS40725 0.40 +1.3
205,117 + QEN71_RS40725 0.75 -0.9
205,118 - QEN71_RS40725 0.75 -1.2
205,120 - QEN71_RS40725 0.75 -0.7
205,120 - QEN71_RS40725 0.75 -0.3
205,120 - QEN71_RS40725 0.75 -0.7
205,314 - +0.2
205,314 - -0.4
205,378 - -1.1
205,510 + -0.4
205,510 + -1.7
205,510 + -0.5
205,511 - -1.3
205,511 - -2.5
205,511 - +1.1
205,511 - +0.0
205,552 - +1.8
205,576 + -1.0
205,576 + -0.5
205,668 - +0.2
205,714 + +0.4
205,714 + +0.5
205,715 - -0.9
205,715 - -2.5
205,772 + +0.4
205,773 - -0.1
205,801 + +1.0
205,801 + -0.5
205,820 - -1.0
205,899 + -1.1
205,899 + -1.6
205,899 + -0.5
205,899 + -1.3
205,900 - -0.4
206,025 - QEN71_RS40730 0.18 -0.7
206,025 - QEN71_RS40730 0.18 -0.3
206,057 - QEN71_RS40730 0.20 -1.1
206,057 - QEN71_RS40730 0.20 -1.5
206,247 + QEN71_RS40730 0.34 -0.7
206,310 - QEN71_RS40730 0.39 -1.7
206,419 + QEN71_RS40730 0.47 +1.7
206,442 + QEN71_RS40730 0.49 -0.3
206,444 + QEN71_RS40730 0.49 -0.8
206,463 + QEN71_RS40730 0.51 -0.7
206,463 + QEN71_RS40730 0.51 -0.5
206,464 - QEN71_RS40730 0.51 -1.6
206,464 - QEN71_RS40730 0.51 -1.5
206,464 - QEN71_RS40730 0.51 +0.7
206,464 - QEN71_RS40730 0.51 -0.7
206,465 + QEN71_RS40730 0.51 -0.2
206,465 + QEN71_RS40730 0.51 +0.5
206,466 - QEN71_RS40730 0.51 +1.5
206,466 - QEN71_RS40730 0.51 -1.8
206,466 - QEN71_RS40730 0.51 -0.5
206,466 - QEN71_RS40730 0.51 +0.3
206,481 + QEN71_RS40730 0.52 -0.0
206,775 + QEN71_RS40730 0.74 +0.0
206,880 - QEN71_RS40730 0.82 +0.3
206,936 - QEN71_RS40730 0.86 -0.6
206,939 + QEN71_RS40730 0.87 -0.3
206,940 - QEN71_RS40730 0.87 -0.4
206,940 - QEN71_RS40730 0.87 -0.9
206,943 + QEN71_RS40730 0.87 -0.1
206,943 + QEN71_RS40730 0.87 -0.4
206,943 + QEN71_RS40730 0.87 +0.3
206,944 - QEN71_RS40730 0.87 +0.2
206,992 + -0.5
206,993 - +0.8
206,993 - -1.7
207,000 - -3.2
207,097 + +0.2
207,097 + +0.8
207,098 - -0.5
207,143 - +0.1
207,193 + +0.3
207,225 - -0.3
207,306 - QEN71_RS40735 0.11 -0.9
207,306 - QEN71_RS40735 0.11 +0.1
207,306 - QEN71_RS40735 0.11 -0.5
207,356 + QEN71_RS40735 0.15 -0.8
207,519 + QEN71_RS40735 0.28 +1.4
207,519 + QEN71_RS40735 0.28 -0.6
207,519 + QEN71_RS40735 0.28 -0.4
207,520 - QEN71_RS40735 0.29 -0.5
207,520 - QEN71_RS40735 0.29 -0.4
207,520 - QEN71_RS40735 0.29 +1.2
207,746 - QEN71_RS40735 0.47 +1.3
207,749 + QEN71_RS40735 0.47 -2.0
207,824 + QEN71_RS40735 0.53 -0.4
207,825 - QEN71_RS40735 0.53 -0.3
208,084 + QEN71_RS40735 0.74 -0.8
208,084 + QEN71_RS40735 0.74 +0.8

Or see this region's nucleotide sequence