Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39605

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39600 and QEN71_RS39605 are separated by 166 nucleotidesQEN71_RS39605 and QEN71_RS39610 are separated by 108 nucleotides QEN71_RS39600: QEN71_RS39600 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,272,783 to 2,274,039 _RS39600 QEN71_RS39605: QEN71_RS39605 - LysR substrate-binding domain-containing protein, at 2,274,206 to 2,275,123 _RS39605 QEN71_RS39610: QEN71_RS39610 - glycine betaine ABC transporter substrate-binding protein, at 2,275,232 to 2,276,236 _RS39610 Position (kb) 2274 2275 2276Strain fitness (log2 ratio) -2 -1 0 1 2at 2273.267 kb on - strand, within QEN71_RS39600at 2273.316 kb on + strand, within QEN71_RS39600at 2273.318 kb on + strand, within QEN71_RS39600at 2273.426 kb on + strand, within QEN71_RS39600at 2273.517 kb on - strand, within QEN71_RS39600at 2273.517 kb on - strand, within QEN71_RS39600at 2273.593 kb on + strand, within QEN71_RS39600at 2273.593 kb on + strand, within QEN71_RS39600at 2273.593 kb on + strand, within QEN71_RS39600at 2273.593 kb on + strand, within QEN71_RS39600at 2273.594 kb on - strand, within QEN71_RS39600at 2273.594 kb on - strand, within QEN71_RS39600at 2273.594 kb on - strand, within QEN71_RS39600at 2273.594 kb on - strand, within QEN71_RS39600at 2273.594 kb on - strand, within QEN71_RS39600at 2273.594 kb on - strand, within QEN71_RS39600at 2273.700 kb on - strand, within QEN71_RS39600at 2274.045 kb on - strandat 2274.134 kb on - strandat 2274.147 kb on + strandat 2274.151 kb on - strandat 2274.162 kb on + strandat 2274.294 kb on + strandat 2274.295 kb on - strandat 2274.295 kb on - strandat 2274.333 kb on - strand, within QEN71_RS39605at 2274.436 kb on + strand, within QEN71_RS39605at 2274.436 kb on + strand, within QEN71_RS39605at 2274.436 kb on + strand, within QEN71_RS39605at 2274.447 kb on + strand, within QEN71_RS39605at 2274.576 kb on + strand, within QEN71_RS39605at 2275.153 kb on - strandat 2275.153 kb on - strandat 2275.153 kb on - strandat 2275.233 kb on + strandat 2275.233 kb on + strandat 2275.234 kb on - strandat 2275.234 kb on - strandat 2275.404 kb on + strand, within QEN71_RS39610at 2275.635 kb on + strand, within QEN71_RS39610at 2275.636 kb on - strand, within QEN71_RS39610at 2275.636 kb on - strand, within QEN71_RS39610at 2275.723 kb on - strand, within QEN71_RS39610at 2275.723 kb on - strand, within QEN71_RS39610at 2275.770 kb on + strand, within QEN71_RS39610

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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2,273,267 - QEN71_RS39600 0.39 +2.1
2,273,316 + QEN71_RS39600 0.42 +1.8
2,273,318 + QEN71_RS39600 0.43 -0.5
2,273,426 + QEN71_RS39600 0.51 +2.1
2,273,517 - QEN71_RS39600 0.58 -0.9
2,273,517 - QEN71_RS39600 0.58 +1.3
2,273,593 + QEN71_RS39600 0.64 -0.1
2,273,593 + QEN71_RS39600 0.64 -1.1
2,273,593 + QEN71_RS39600 0.64 -2.1
2,273,593 + QEN71_RS39600 0.64 -1.9
2,273,594 - QEN71_RS39600 0.65 +0.2
2,273,594 - QEN71_RS39600 0.65 -1.4
2,273,594 - QEN71_RS39600 0.65 -0.2
2,273,594 - QEN71_RS39600 0.65 -1.8
2,273,594 - QEN71_RS39600 0.65 -0.2
2,273,594 - QEN71_RS39600 0.65 -0.2
2,273,700 - QEN71_RS39600 0.73 -0.8
2,274,045 - -0.3
2,274,134 - -1.3
2,274,147 + +0.1
2,274,151 - -2.6
2,274,162 + +0.0
2,274,294 + +0.8
2,274,295 - +0.3
2,274,295 - -0.1
2,274,333 - QEN71_RS39605 0.14 +0.1
2,274,436 + QEN71_RS39605 0.25 -0.1
2,274,436 + QEN71_RS39605 0.25 -0.8
2,274,436 + QEN71_RS39605 0.25 -0.3
2,274,447 + QEN71_RS39605 0.26 +0.9
2,274,576 + QEN71_RS39605 0.40 +0.1
2,275,153 - -0.5
2,275,153 - +0.8
2,275,153 - +2.3
2,275,233 + -0.3
2,275,233 + +1.1
2,275,234 - -0.4
2,275,234 - -1.1
2,275,404 + QEN71_RS39610 0.17 +1.4
2,275,635 + QEN71_RS39610 0.40 +0.0
2,275,636 - QEN71_RS39610 0.40 +0.4
2,275,636 - QEN71_RS39610 0.40 -0.1
2,275,723 - QEN71_RS39610 0.49 -0.7
2,275,723 - QEN71_RS39610 0.49 +0.1
2,275,770 + QEN71_RS39610 0.54 -1.4

Or see this region's nucleotide sequence