Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38035

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38030 and QEN71_RS38035 are separated by 60 nucleotidesQEN71_RS38035 and QEN71_RS38040 are separated by 167 nucleotides QEN71_RS38030: QEN71_RS38030 - MFS transporter, at 1,905,167 to 1,906,522 _RS38030 QEN71_RS38035: QEN71_RS38035 - MmgE/PrpD family protein, at 1,906,583 to 1,908,001 _RS38035 QEN71_RS38040: QEN71_RS38040 - LysR family transcriptional regulator, at 1,908,169 to 1,909,095 _RS38040 Position (kb) 1906 1907 1908 1909Strain fitness (log2 ratio) -2 -1 0 1 2at 1905.594 kb on + strand, within QEN71_RS38030at 1905.595 kb on - strand, within QEN71_RS38030at 1905.595 kb on - strand, within QEN71_RS38030at 1905.615 kb on + strand, within QEN71_RS38030at 1905.615 kb on + strand, within QEN71_RS38030at 1905.616 kb on - strand, within QEN71_RS38030at 1905.684 kb on + strand, within QEN71_RS38030at 1905.696 kb on + strand, within QEN71_RS38030at 1905.696 kb on + strand, within QEN71_RS38030at 1905.709 kb on + strand, within QEN71_RS38030at 1906.305 kb on + strand, within QEN71_RS38030at 1906.305 kb on + strand, within QEN71_RS38030at 1906.306 kb on - strand, within QEN71_RS38030at 1906.306 kb on - strand, within QEN71_RS38030at 1906.460 kb on + strandat 1907.016 kb on + strand, within QEN71_RS38035at 1907.016 kb on + strand, within QEN71_RS38035at 1907.017 kb on - strand, within QEN71_RS38035at 1907.018 kb on - strand, within QEN71_RS38035at 1907.155 kb on - strand, within QEN71_RS38035at 1907.265 kb on + strand, within QEN71_RS38035at 1907.265 kb on + strand, within QEN71_RS38035at 1907.266 kb on - strand, within QEN71_RS38035at 1907.266 kb on - strand, within QEN71_RS38035at 1907.266 kb on - strand, within QEN71_RS38035at 1907.266 kb on - strand, within QEN71_RS38035at 1907.324 kb on + strand, within QEN71_RS38035at 1907.325 kb on + strand, within QEN71_RS38035at 1907.527 kb on + strand, within QEN71_RS38035at 1907.528 kb on - strand, within QEN71_RS38035at 1907.528 kb on - strand, within QEN71_RS38035at 1907.780 kb on + strand, within QEN71_RS38035at 1907.781 kb on - strand, within QEN71_RS38035at 1907.870 kb on + strandat 1907.928 kb on + strandat 1908.093 kb on - strandat 1908.523 kb on + strand, within QEN71_RS38040at 1908.524 kb on - strand, within QEN71_RS38040at 1908.524 kb on - strand, within QEN71_RS38040at 1908.524 kb on - strand, within QEN71_RS38040at 1908.524 kb on - strand, within QEN71_RS38040at 1908.679 kb on + strand, within QEN71_RS38040at 1908.680 kb on - strand, within QEN71_RS38040

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,905,594 + QEN71_RS38030 0.31 +0.2
1,905,595 - QEN71_RS38030 0.32 +0.2
1,905,595 - QEN71_RS38030 0.32 +0.4
1,905,615 + QEN71_RS38030 0.33 -0.2
1,905,615 + QEN71_RS38030 0.33 -0.1
1,905,616 - QEN71_RS38030 0.33 -0.5
1,905,684 + QEN71_RS38030 0.38 -0.6
1,905,696 + QEN71_RS38030 0.39 -0.0
1,905,696 + QEN71_RS38030 0.39 -0.8
1,905,709 + QEN71_RS38030 0.40 -1.8
1,906,305 + QEN71_RS38030 0.84 -0.7
1,906,305 + QEN71_RS38030 0.84 +0.5
1,906,306 - QEN71_RS38030 0.84 +0.8
1,906,306 - QEN71_RS38030 0.84 +0.5
1,906,460 + +1.0
1,907,016 + QEN71_RS38035 0.31 +0.0
1,907,016 + QEN71_RS38035 0.31 -0.7
1,907,017 - QEN71_RS38035 0.31 -0.5
1,907,018 - QEN71_RS38035 0.31 +0.2
1,907,155 - QEN71_RS38035 0.40 -2.7
1,907,265 + QEN71_RS38035 0.48 -0.1
1,907,265 + QEN71_RS38035 0.48 -1.6
1,907,266 - QEN71_RS38035 0.48 +0.9
1,907,266 - QEN71_RS38035 0.48 -0.7
1,907,266 - QEN71_RS38035 0.48 -1.0
1,907,266 - QEN71_RS38035 0.48 +1.1
1,907,324 + QEN71_RS38035 0.52 -1.5
1,907,325 + QEN71_RS38035 0.52 +0.0
1,907,527 + QEN71_RS38035 0.67 +0.2
1,907,528 - QEN71_RS38035 0.67 +2.0
1,907,528 - QEN71_RS38035 0.67 -1.0
1,907,780 + QEN71_RS38035 0.84 +1.6
1,907,781 - QEN71_RS38035 0.84 +0.4
1,907,870 + -0.4
1,907,928 + +0.6
1,908,093 - -0.3
1,908,523 + QEN71_RS38040 0.38 +0.3
1,908,524 - QEN71_RS38040 0.38 -1.8
1,908,524 - QEN71_RS38040 0.38 -0.2
1,908,524 - QEN71_RS38040 0.38 -0.7
1,908,524 - QEN71_RS38040 0.38 -0.3
1,908,679 + QEN71_RS38040 0.55 -2.2
1,908,680 - QEN71_RS38040 0.55 +0.4

Or see this region's nucleotide sequence