Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32465 and QEN71_RS32470 are separated by 49 nucleotides QEN71_RS32470 and QEN71_RS32475 are separated by 14 nucleotides QEN71_RS32475 and QEN71_RS32480 overlap by 4 nucleotides QEN71_RS32480 and QEN71_RS32485 are separated by 191 nucleotides
QEN71_RS32465: QEN71_RS32465 - ABC transporter substrate-binding protein, at 620,558 to 621,991
_RS32465
QEN71_RS32470: QEN71_RS32470 - ferredoxin family protein, at 622,041 to 622,286
_RS32470
QEN71_RS32475: QEN71_RS32475 - fumarate reductase/succinate dehydrogenase flavoprotein subunit, at 622,301 to 624,067
_RS32475
QEN71_RS32480: QEN71_RS32480 - GntR family transcriptional regulator, at 624,064 to 624,855
_RS32480
QEN71_RS32485: QEN71_RS32485 - aminotransferase class V-fold PLP-dependent enzyme, at 625,047 to 626,390
_RS32485
Position (kb) 622
623
624
625 Strain fitness (log2 ratio) -2
-1
0
1 at 621.781 kb on - strand, within QEN71_RS32465 at 621.816 kb on + strand, within QEN71_RS32465 at 621.816 kb on + strand, within QEN71_RS32465 at 621.820 kb on + strand, within QEN71_RS32465 at 621.821 kb on - strand, within QEN71_RS32465 at 622.013 kb on - strand at 622.133 kb on + strand, within QEN71_RS32470 at 622.134 kb on - strand, within QEN71_RS32470 at 622.135 kb on + strand, within QEN71_RS32470 at 622.135 kb on + strand, within QEN71_RS32470 at 622.136 kb on - strand, within QEN71_RS32470 at 622.279 kb on + strand at 622.280 kb on - strand at 622.377 kb on + strand at 622.401 kb on - strand at 622.413 kb on + strand at 622.414 kb on - strand at 622.474 kb on + strand at 622.801 kb on - strand, within QEN71_RS32475 at 622.899 kb on + strand, within QEN71_RS32475 at 622.920 kb on + strand, within QEN71_RS32475 at 622.921 kb on - strand, within QEN71_RS32475 at 622.995 kb on + strand, within QEN71_RS32475 at 622.995 kb on + strand, within QEN71_RS32475 at 623.042 kb on - strand, within QEN71_RS32475 at 623.042 kb on - strand, within QEN71_RS32475 at 623.212 kb on - strand, within QEN71_RS32475 at 623.520 kb on + strand, within QEN71_RS32475 at 623.634 kb on - strand, within QEN71_RS32475 at 623.688 kb on + strand, within QEN71_RS32475 at 623.688 kb on + strand, within QEN71_RS32475 at 623.688 kb on + strand, within QEN71_RS32475 at 623.689 kb on - strand, within QEN71_RS32475 at 623.689 kb on - strand, within QEN71_RS32475 at 623.689 kb on - strand, within QEN71_RS32475 at 623.805 kb on + strand, within QEN71_RS32475 at 624.046 kb on - strand at 624.053 kb on + strand at 624.054 kb on - strand at 624.103 kb on - strand at 624.103 kb on - strand at 624.159 kb on - strand, within QEN71_RS32480 at 624.159 kb on - strand, within QEN71_RS32480 at 624.170 kb on + strand, within QEN71_RS32480 at 624.722 kb on - strand, within QEN71_RS32480 at 624.759 kb on - strand, within QEN71_RS32480 at 624.759 kb on - strand, within QEN71_RS32480 at 624.920 kb on + strand at 624.934 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 621,781 - QEN71_RS32465 0.85 -0.3 621,816 + QEN71_RS32465 0.88 +0.3 621,816 + QEN71_RS32465 0.88 -0.7 621,820 + QEN71_RS32465 0.88 +0.3 621,821 - QEN71_RS32465 0.88 -0.6 622,013 - -0.2 622,133 + QEN71_RS32470 0.37 -0.2 622,134 - QEN71_RS32470 0.38 -1.5 622,135 + QEN71_RS32470 0.38 -1.1 622,135 + QEN71_RS32470 0.38 +0.2 622,136 - QEN71_RS32470 0.39 -0.1 622,279 + +1.0 622,280 - -1.6 622,377 + +0.4 622,401 - +0.7 622,413 + +0.6 622,414 - +1.4 622,474 + -0.6 622,801 - QEN71_RS32475 0.28 -2.0 622,899 + QEN71_RS32475 0.34 +0.3 622,920 + QEN71_RS32475 0.35 -0.1 622,921 - QEN71_RS32475 0.35 -1.1 622,995 + QEN71_RS32475 0.39 -0.3 622,995 + QEN71_RS32475 0.39 -0.4 623,042 - QEN71_RS32475 0.42 -0.4 623,042 - QEN71_RS32475 0.42 +1.1 623,212 - QEN71_RS32475 0.52 +1.1 623,520 + QEN71_RS32475 0.69 -0.0 623,634 - QEN71_RS32475 0.75 -1.1 623,688 + QEN71_RS32475 0.78 -2.1 623,688 + QEN71_RS32475 0.78 -1.2 623,688 + QEN71_RS32475 0.78 -1.6 623,689 - QEN71_RS32475 0.79 +1.7 623,689 - QEN71_RS32475 0.79 -0.3 623,689 - QEN71_RS32475 0.79 -0.4 623,805 + QEN71_RS32475 0.85 +0.3 624,046 - +1.1 624,053 + -0.5 624,054 - +1.0 624,103 - -0.8 624,103 - -0.3 624,159 - QEN71_RS32480 0.12 -0.4 624,159 - QEN71_RS32480 0.12 -1.2 624,170 + QEN71_RS32480 0.13 -0.8 624,722 - QEN71_RS32480 0.83 +0.0 624,759 - QEN71_RS32480 0.88 -0.6 624,759 - QEN71_RS32480 0.88 -0.3 624,920 + +0.7 624,934 - -0.3
Or see this region's nucleotide sequence