Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25360

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS25355 and QEN71_RS25360 are separated by 35 nucleotidesQEN71_RS25360 and QEN71_RS25365 are separated by 208 nucleotides QEN71_RS25355: QEN71_RS25355 - urea ABC transporter ATP-binding subunit UrtE, at 5,641,143 to 5,641,835 _RS25355 QEN71_RS25360: QEN71_RS25360 - urease accessory protein UreD, at 5,641,871 to 5,642,752 _RS25360 QEN71_RS25365: QEN71_RS25365 - transporter substrate-binding domain-containing protein, at 5,642,961 to 5,643,764 _RS25365 Position (kb) 5641 5642 5643Strain fitness (log2 ratio) -2 -1 0 1 2at 5640.913 kb on + strandat 5641.154 kb on - strandat 5641.171 kb on - strandat 5641.173 kb on + strandat 5641.255 kb on + strand, within QEN71_RS25355at 5641.270 kb on + strand, within QEN71_RS25355at 5641.271 kb on - strand, within QEN71_RS25355at 5641.271 kb on - strand, within QEN71_RS25355at 5641.271 kb on - strand, within QEN71_RS25355at 5641.271 kb on - strand, within QEN71_RS25355at 5641.273 kb on + strand, within QEN71_RS25355at 5641.273 kb on + strand, within QEN71_RS25355at 5641.274 kb on - strand, within QEN71_RS25355at 5641.381 kb on - strand, within QEN71_RS25355at 5641.420 kb on + strand, within QEN71_RS25355at 5641.579 kb on + strand, within QEN71_RS25355at 5641.579 kb on + strand, within QEN71_RS25355at 5641.579 kb on + strand, within QEN71_RS25355at 5641.580 kb on - strand, within QEN71_RS25355at 5641.713 kb on + strand, within QEN71_RS25355at 5641.713 kb on + strand, within QEN71_RS25355at 5641.714 kb on - strand, within QEN71_RS25355at 5641.716 kb on + strand, within QEN71_RS25355at 5641.860 kb on - strandat 5641.878 kb on + strandat 5641.879 kb on - strandat 5641.978 kb on + strand, within QEN71_RS25360at 5641.979 kb on - strand, within QEN71_RS25360at 5642.030 kb on + strand, within QEN71_RS25360at 5642.171 kb on + strand, within QEN71_RS25360at 5642.588 kb on - strand, within QEN71_RS25360at 5642.772 kb on - strandat 5642.772 kb on - strandat 5642.802 kb on + strandat 5642.803 kb on - strandat 5642.872 kb on + strandat 5642.872 kb on + strandat 5642.901 kb on - strandat 5643.114 kb on + strand, within QEN71_RS25365at 5643.159 kb on + strand, within QEN71_RS25365at 5643.160 kb on - strand, within QEN71_RS25365at 5643.160 kb on - strand, within QEN71_RS25365at 5643.246 kb on + strand, within QEN71_RS25365at 5643.246 kb on + strand, within QEN71_RS25365at 5643.247 kb on - strand, within QEN71_RS25365at 5643.247 kb on - strand, within QEN71_RS25365at 5643.343 kb on - strand, within QEN71_RS25365at 5643.343 kb on - strand, within QEN71_RS25365at 5643.343 kb on - strand, within QEN71_RS25365at 5643.345 kb on + strand, within QEN71_RS25365at 5643.345 kb on + strand, within QEN71_RS25365at 5643.345 kb on + strand, within QEN71_RS25365at 5643.346 kb on - strand, within QEN71_RS25365at 5643.346 kb on - strand, within QEN71_RS25365at 5643.346 kb on - strand, within QEN71_RS25365

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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5,640,913 + -0.5
5,641,154 - +0.5
5,641,171 - -0.2
5,641,173 + -1.5
5,641,255 + QEN71_RS25355 0.16 -0.5
5,641,270 + QEN71_RS25355 0.18 +1.1
5,641,271 - QEN71_RS25355 0.18 +0.4
5,641,271 - QEN71_RS25355 0.18 +0.1
5,641,271 - QEN71_RS25355 0.18 +1.1
5,641,271 - QEN71_RS25355 0.18 -0.9
5,641,273 + QEN71_RS25355 0.19 +1.4
5,641,273 + QEN71_RS25355 0.19 -0.8
5,641,274 - QEN71_RS25355 0.19 +0.1
5,641,381 - QEN71_RS25355 0.34 -0.5
5,641,420 + QEN71_RS25355 0.40 -1.0
5,641,579 + QEN71_RS25355 0.63 -0.1
5,641,579 + QEN71_RS25355 0.63 -0.1
5,641,579 + QEN71_RS25355 0.63 +0.3
5,641,580 - QEN71_RS25355 0.63 -0.0
5,641,713 + QEN71_RS25355 0.82 +1.2
5,641,713 + QEN71_RS25355 0.82 -1.1
5,641,714 - QEN71_RS25355 0.82 +1.4
5,641,716 + QEN71_RS25355 0.83 +0.4
5,641,860 - -0.0
5,641,878 + -0.3
5,641,879 - -0.4
5,641,978 + QEN71_RS25360 0.12 +0.3
5,641,979 - QEN71_RS25360 0.12 -2.7
5,642,030 + QEN71_RS25360 0.18 +2.3
5,642,171 + QEN71_RS25360 0.34 -1.0
5,642,588 - QEN71_RS25360 0.81 -1.0
5,642,772 - -1.2
5,642,772 - +0.4
5,642,802 + +0.0
5,642,803 - -0.1
5,642,872 + -0.1
5,642,872 + +1.1
5,642,901 - +1.1
5,643,114 + QEN71_RS25365 0.19 -1.0
5,643,159 + QEN71_RS25365 0.25 -0.2
5,643,160 - QEN71_RS25365 0.25 -0.5
5,643,160 - QEN71_RS25365 0.25 +1.0
5,643,246 + QEN71_RS25365 0.35 +0.1
5,643,246 + QEN71_RS25365 0.35 +0.0
5,643,247 - QEN71_RS25365 0.36 -0.2
5,643,247 - QEN71_RS25365 0.36 -1.5
5,643,343 - QEN71_RS25365 0.48 -0.2
5,643,343 - QEN71_RS25365 0.48 +0.1
5,643,343 - QEN71_RS25365 0.48 -1.3
5,643,345 + QEN71_RS25365 0.48 -0.4
5,643,345 + QEN71_RS25365 0.48 +0.4
5,643,345 + QEN71_RS25365 0.48 -0.2
5,643,346 - QEN71_RS25365 0.48 +0.0
5,643,346 - QEN71_RS25365 0.48 -1.4
5,643,346 - QEN71_RS25365 0.48 -1.5

Or see this region's nucleotide sequence