Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS25305 and QEN71_RS25310 are separated by 359 nucleotides QEN71_RS25310 and QEN71_RS25315 are separated by 31 nucleotides QEN71_RS25315 and QEN71_RS25320 are separated by 13 nucleotides QEN71_RS25320 and QEN71_RS25325 are separated by 29 nucleotides
QEN71_RS25305: QEN71_RS25305 - LacI family DNA-binding transcriptional regulator, at 5,630,627 to 5,631,613
_RS25305
QEN71_RS25310: QEN71_RS25310 - protein-L-isoaspartate O-methyltransferase, at 5,631,973 to 5,632,626
_RS25310
QEN71_RS25315: QEN71_RS25315 - rhodanese-like domain-containing protein, at 5,632,658 to 5,632,981
_RS25315
QEN71_RS25320: QEN71_RS25320 - hypothetical protein, at 5,632,995 to 5,633,156
_RS25320
QEN71_RS25325: QEN71_RS25325 - DUF2844 domain-containing protein, at 5,633,186 to 5,633,641
_RS25325
Position (kb) 5631
5632
5633 Strain fitness (log2 ratio) -1
0
1
2 at 5631.027 kb on + strand, within QEN71_RS25305 at 5631.027 kb on + strand, within QEN71_RS25305 at 5631.051 kb on + strand, within QEN71_RS25305 at 5631.052 kb on - strand, within QEN71_RS25305 at 5631.052 kb on - strand, within QEN71_RS25305 at 5631.057 kb on + strand, within QEN71_RS25305 at 5631.057 kb on + strand, within QEN71_RS25305 at 5631.057 kb on + strand, within QEN71_RS25305 at 5631.138 kb on + strand, within QEN71_RS25305 at 5631.138 kb on + strand, within QEN71_RS25305 at 5631.139 kb on - strand, within QEN71_RS25305 at 5631.156 kb on + strand, within QEN71_RS25305 at 5631.156 kb on + strand, within QEN71_RS25305 at 5631.156 kb on + strand, within QEN71_RS25305 at 5631.156 kb on + strand, within QEN71_RS25305 at 5631.156 kb on + strand, within QEN71_RS25305 at 5631.157 kb on - strand, within QEN71_RS25305 at 5631.157 kb on - strand, within QEN71_RS25305 at 5631.157 kb on - strand, within QEN71_RS25305 at 5631.157 kb on - strand, within QEN71_RS25305 at 5631.157 kb on - strand, within QEN71_RS25305 at 5631.157 kb on - strand, within QEN71_RS25305 at 5631.297 kb on + strand, within QEN71_RS25305 at 5631.348 kb on + strand, within QEN71_RS25305 at 5631.348 kb on + strand, within QEN71_RS25305 at 5631.348 kb on + strand, within QEN71_RS25305 at 5631.348 kb on + strand, within QEN71_RS25305 at 5631.349 kb on - strand, within QEN71_RS25305 at 5631.760 kb on - strand at 5631.772 kb on + strand at 5631.925 kb on + strand at 5631.925 kb on + strand at 5631.926 kb on - strand at 5632.031 kb on + strand at 5632.032 kb on - strand at 5632.032 kb on - strand at 5632.032 kb on - strand at 5632.240 kb on + strand, within QEN71_RS25310 at 5632.290 kb on + strand, within QEN71_RS25310 at 5632.904 kb on + strand, within QEN71_RS25315 at 5632.925 kb on + strand, within QEN71_RS25315 at 5632.976 kb on + strand at 5633.023 kb on - strand, within QEN71_RS25320 at 5633.156 kb on + strand at 5633.156 kb on + strand at 5633.156 kb on + strand at 5633.157 kb on - strand at 5633.157 kb on - strand at 5633.157 kb on - strand at 5633.157 kb on - strand at 5633.179 kb on + strand at 5633.180 kb on - strand at 5633.339 kb on + strand, within QEN71_RS25325 at 5633.339 kb on + strand, within QEN71_RS25325 at 5633.339 kb on + strand, within QEN71_RS25325 at 5633.469 kb on - strand, within QEN71_RS25325 at 5633.591 kb on + strand, within QEN71_RS25325 at 5633.591 kb on + strand, within QEN71_RS25325 at 5633.592 kb on - strand, within QEN71_RS25325
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 5,631,027 + QEN71_RS25305 0.41 +0.7 5,631,027 + QEN71_RS25305 0.41 -0.7 5,631,051 + QEN71_RS25305 0.43 -0.4 5,631,052 - QEN71_RS25305 0.43 -0.2 5,631,052 - QEN71_RS25305 0.43 -0.7 5,631,057 + QEN71_RS25305 0.44 -0.3 5,631,057 + QEN71_RS25305 0.44 -0.9 5,631,057 + QEN71_RS25305 0.44 +0.7 5,631,138 + QEN71_RS25305 0.52 -0.5 5,631,138 + QEN71_RS25305 0.52 -0.4 5,631,139 - QEN71_RS25305 0.52 +0.5 5,631,156 + QEN71_RS25305 0.54 -1.4 5,631,156 + QEN71_RS25305 0.54 -1.0 5,631,156 + QEN71_RS25305 0.54 +0.8 5,631,156 + QEN71_RS25305 0.54 +1.6 5,631,156 + QEN71_RS25305 0.54 -0.1 5,631,157 - QEN71_RS25305 0.54 +0.6 5,631,157 - QEN71_RS25305 0.54 -0.2 5,631,157 - QEN71_RS25305 0.54 -0.4 5,631,157 - QEN71_RS25305 0.54 -1.5 5,631,157 - QEN71_RS25305 0.54 -0.5 5,631,157 - QEN71_RS25305 0.54 -0.8 5,631,297 + QEN71_RS25305 0.68 -0.1 5,631,348 + QEN71_RS25305 0.73 -1.1 5,631,348 + QEN71_RS25305 0.73 +0.1 5,631,348 + QEN71_RS25305 0.73 +0.7 5,631,348 + QEN71_RS25305 0.73 -0.1 5,631,349 - QEN71_RS25305 0.73 +1.9 5,631,760 - +1.7 5,631,772 + +0.1 5,631,925 + -1.6 5,631,925 + -0.7 5,631,926 - -0.7 5,632,031 + -1.1 5,632,032 - -0.1 5,632,032 - +0.8 5,632,032 - +1.5 5,632,240 + QEN71_RS25310 0.41 +1.3 5,632,290 + QEN71_RS25310 0.48 +0.1 5,632,904 + QEN71_RS25315 0.76 -1.0 5,632,925 + QEN71_RS25315 0.82 +0.6 5,632,976 + +0.8 5,633,023 - QEN71_RS25320 0.17 +0.4 5,633,156 + -0.1 5,633,156 + -0.7 5,633,156 + +0.4 5,633,157 - +0.1 5,633,157 - +0.1 5,633,157 - -0.4 5,633,157 - -0.2 5,633,179 + +1.4 5,633,180 - -0.2 5,633,339 + QEN71_RS25325 0.34 -0.5 5,633,339 + QEN71_RS25325 0.34 +0.5 5,633,339 + QEN71_RS25325 0.34 +0.8 5,633,469 - QEN71_RS25325 0.62 +0.7 5,633,591 + QEN71_RS25325 0.89 +1.6 5,633,591 + QEN71_RS25325 0.89 +0.5 5,633,592 - QEN71_RS25325 0.89 -0.1
Or see this region's nucleotide sequence