Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS04430 and QEN71_RS04435 are separated by 63 nucleotides QEN71_RS04435 and QEN71_RS04440 are separated by 112 nucleotides QEN71_RS04440 and QEN71_RS04445 are separated by 321 nucleotides QEN71_RS04445 and QEN71_RS04450 are separated by 193 nucleotides QEN71_RS04450 and QEN71_RS04455 are separated by 22 nucleotides
QEN71_RS04430: QEN71_RS04430 - tRNA-Asn, at 976,114 to 976,189
_RS04430
QEN71_RS04435: QEN71_RS04435 - tRNA-Asn, at 976,253 to 976,328
_RS04435
QEN71_RS04440: QEN71_RS04440 - ferredoxin family protein, at 976,441 to 976,764
_RS04440
QEN71_RS04445: QEN71_RS04445 - nicotinate phosphoribosyltransferase, at 977,086 to 978,285
_RS04445
QEN71_RS04450: QEN71_RS04450 - lactate utilization protein C, at 978,479 to 979,141
_RS04450
QEN71_RS04455: QEN71_RS04455 - sodium:proton antiporter, at 979,164 to 980,570
_RS04455
Position (kb) 977
978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 976.147 kb on - strand, within QEN71_RS04430 at 976.154 kb on - strand, within QEN71_RS04430 at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.198 kb on - strand at 976.211 kb on - strand at 976.215 kb on - strand at 976.215 kb on - strand at 976.381 kb on - strand at 976.381 kb on - strand at 976.381 kb on - strand at 976.401 kb on + strand at 976.402 kb on - strand at 976.410 kb on + strand at 976.833 kb on + strand at 976.833 kb on + strand at 976.833 kb on + strand at 976.833 kb on + strand at 976.833 kb on + strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.834 kb on - strand at 976.838 kb on + strand at 976.839 kb on - strand at 976.839 kb on - strand at 976.839 kb on - strand at 976.848 kb on + strand at 976.848 kb on + strand at 976.848 kb on + strand at 976.849 kb on - strand at 976.849 kb on - strand at 976.849 kb on - strand at 976.849 kb on - strand at 976.849 kb on - strand at 976.855 kb on + strand at 976.855 kb on + strand at 976.855 kb on + strand at 976.855 kb on + strand at 976.856 kb on - strand at 976.877 kb on + strand at 976.877 kb on + strand at 976.877 kb on + strand at 976.877 kb on + strand at 976.877 kb on + strand at 976.877 kb on + strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.878 kb on - strand at 976.879 kb on + strand at 976.879 kb on + strand at 976.879 kb on + strand at 976.880 kb on - strand at 976.880 kb on - strand at 976.880 kb on - strand at 976.880 kb on - strand at 976.893 kb on + strand at 976.893 kb on + strand at 976.893 kb on + strand at 976.893 kb on + strand at 976.893 kb on + strand at 976.894 kb on - strand at 976.894 kb on - strand at 976.894 kb on - strand at 976.894 kb on - strand at 976.894 kb on - strand at 976.894 kb on - strand at 976.898 kb on + strand at 976.898 kb on + strand at 976.899 kb on - strand at 976.979 kb on + strand at 977.094 kb on + strand at 977.095 kb on - strand at 977.095 kb on - strand at 977.095 kb on - strand at 977.095 kb on - strand at 977.095 kb on - strand at 977.095 kb on - strand at 977.119 kb on + strand at 977.119 kb on + strand at 977.119 kb on + strand at 977.119 kb on + strand at 977.120 kb on - strand at 977.120 kb on - strand at 977.120 kb on - strand at 977.120 kb on - strand at 977.176 kb on + strand at 977.176 kb on + strand at 977.218 kb on + strand, within QEN71_RS04445 at 977.219 kb on - strand, within QEN71_RS04445 at 977.232 kb on - strand, within QEN71_RS04445 at 977.232 kb on - strand, within QEN71_RS04445 at 977.288 kb on - strand, within QEN71_RS04445 at 977.359 kb on + strand, within QEN71_RS04445 at 977.360 kb on - strand, within QEN71_RS04445 at 977.453 kb on + strand, within QEN71_RS04445 at 977.476 kb on + strand, within QEN71_RS04445 at 977.477 kb on - strand, within QEN71_RS04445 at 977.506 kb on + strand, within QEN71_RS04445 at 977.506 kb on + strand, within QEN71_RS04445 at 977.507 kb on - strand, within QEN71_RS04445 at 977.590 kb on + strand, within QEN71_RS04445 at 977.693 kb on - strand, within QEN71_RS04445 at 977.818 kb on + strand, within QEN71_RS04445 at 977.854 kb on + strand, within QEN71_RS04445 at 977.854 kb on + strand, within QEN71_RS04445 at 977.854 kb on + strand, within QEN71_RS04445 at 977.854 kb on + strand, within QEN71_RS04445 at 977.855 kb on - strand, within QEN71_RS04445 at 977.855 kb on - strand, within QEN71_RS04445 at 977.855 kb on - strand, within QEN71_RS04445 at 977.855 kb on - strand, within QEN71_RS04445 at 977.890 kb on + strand, within QEN71_RS04445 at 977.890 kb on + strand, within QEN71_RS04445 at 977.890 kb on + strand, within QEN71_RS04445 at 977.890 kb on + strand, within QEN71_RS04445 at 977.890 kb on + strand, within QEN71_RS04445 at 977.890 kb on + strand, within QEN71_RS04445 at 977.890 kb on + strand, within QEN71_RS04445 at 977.891 kb on - strand, within QEN71_RS04445 at 977.891 kb on - strand, within QEN71_RS04445 at 977.891 kb on - strand, within QEN71_RS04445 at 977.891 kb on - strand, within QEN71_RS04445 at 977.891 kb on - strand, within QEN71_RS04445 at 977.891 kb on - strand, within QEN71_RS04445 at 977.891 kb on - strand, within QEN71_RS04445 at 977.891 kb on - strand, within QEN71_RS04445 at 977.891 kb on - strand, within QEN71_RS04445 at 977.891 kb on - strand, within QEN71_RS04445 at 977.968 kb on + strand, within QEN71_RS04445 at 977.968 kb on + strand, within QEN71_RS04445 at 977.969 kb on - strand, within QEN71_RS04445 at 977.969 kb on - strand, within QEN71_RS04445 at 978.049 kb on + strand, within QEN71_RS04445 at 978.049 kb on + strand, within QEN71_RS04445 at 978.049 kb on + strand, within QEN71_RS04445 at 978.050 kb on - strand, within QEN71_RS04445 at 978.050 kb on - strand, within QEN71_RS04445 at 978.050 kb on - strand, within QEN71_RS04445 at 978.050 kb on - strand, within QEN71_RS04445 at 978.050 kb on - strand, within QEN71_RS04445 at 978.118 kb on + strand, within QEN71_RS04445 at 978.118 kb on + strand, within QEN71_RS04445 at 978.118 kb on + strand, within QEN71_RS04445 at 978.118 kb on + strand, within QEN71_RS04445 at 978.119 kb on - strand, within QEN71_RS04445 at 978.220 kb on + strand at 978.220 kb on + strand at 978.220 kb on + strand at 978.221 kb on - strand at 978.221 kb on - strand at 978.221 kb on - strand at 978.230 kb on - strand at 978.283 kb on + strand at 978.283 kb on + strand at 978.284 kb on - strand at 978.284 kb on - strand at 978.337 kb on + strand at 978.337 kb on + strand at 978.338 kb on - strand at 978.347 kb on + strand at 978.347 kb on + strand at 978.347 kb on + strand at 978.347 kb on + strand at 978.347 kb on + strand at 978.347 kb on + strand at 978.347 kb on + strand at 978.347 kb on + strand at 978.347 kb on + strand at 978.347 kb on + strand at 978.347 kb on + strand at 978.348 kb on - strand at 978.348 kb on - strand at 978.348 kb on - strand at 978.348 kb on - strand at 978.348 kb on - strand at 978.348 kb on - strand at 978.348 kb on - strand at 978.349 kb on + strand at 978.349 kb on + strand at 978.349 kb on + strand at 978.349 kb on + strand at 978.349 kb on + strand at 978.349 kb on + strand at 978.349 kb on + strand at 978.350 kb on - strand at 978.350 kb on - strand at 978.350 kb on - strand at 978.350 kb on - strand at 978.350 kb on - strand at 978.350 kb on - strand at 978.388 kb on + strand at 978.389 kb on - strand at 978.390 kb on + strand at 978.390 kb on + strand at 978.390 kb on + strand at 978.390 kb on + strand at 978.435 kb on + strand at 978.581 kb on + strand, within QEN71_RS04450 at 978.911 kb on + strand, within QEN71_RS04450 at 978.911 kb on + strand, within QEN71_RS04450
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 976,147 - QEN71_RS04430 0.43 +0.7 976,154 - QEN71_RS04430 0.53 -0.3 976,198 - +0.4 976,198 - +0.3 976,198 - -0.0 976,198 - -0.5 976,198 - +0.4 976,198 - +0.6 976,198 - +1.0 976,198 - -1.3 976,198 - +1.7 976,198 - -0.2 976,198 - -0.4 976,198 - -0.4 976,198 - -2.3 976,211 - -0.8 976,215 - +0.3 976,215 - -0.5 976,381 - -0.2 976,381 - -0.4 976,381 - -0.5 976,401 + -0.9 976,402 - +0.1 976,410 + +0.0 976,833 + -0.2 976,833 + +1.0 976,833 + -0.5 976,833 + -0.4 976,833 + -1.3 976,834 - +0.8 976,834 - +1.2 976,834 - +1.3 976,834 - +0.6 976,834 - +3.0 976,834 - +0.7 976,834 - -0.5 976,834 - +2.0 976,838 + -3.4 976,839 - +1.2 976,839 - -0.1 976,839 - -0.3 976,848 + -2.0 976,848 + -0.4 976,848 + -1.0 976,849 - +0.7 976,849 - -1.0 976,849 - +0.5 976,849 - -0.5 976,849 - -2.9 976,855 + +0.0 976,855 + +0.0 976,855 + -0.4 976,855 + -1.0 976,856 - -1.4 976,877 + +0.3 976,877 + -1.8 976,877 + -1.1 976,877 + -0.1 976,877 + -0.8 976,877 + +1.0 976,878 - -0.3 976,878 - -0.2 976,878 - -0.9 976,878 - +0.3 976,878 - -2.8 976,878 - +0.2 976,878 - +0.5 976,878 - -0.3 976,878 - +0.0 976,878 - -2.1 976,879 + -0.6 976,879 + -0.2 976,879 + -0.8 976,880 - -1.7 976,880 - -0.8 976,880 - -0.1 976,880 - -0.3 976,893 + -1.5 976,893 + +0.1 976,893 + -0.4 976,893 + -0.9 976,893 + +0.5 976,894 - -1.0 976,894 - +0.5 976,894 - -0.2 976,894 - -0.0 976,894 - -0.6 976,894 - -0.6 976,898 + -1.3 976,898 + -0.4 976,899 - +0.4 976,979 + -0.5 977,094 + -0.3 977,095 - +1.8 977,095 - +1.0 977,095 - -0.5 977,095 - -0.3 977,095 - -0.0 977,095 - -0.3 977,119 + -1.1 977,119 + -0.5 977,119 + -0.8 977,119 + -2.0 977,120 - -0.8 977,120 - +1.0 977,120 - +0.4 977,120 - -0.8 977,176 + -0.3 977,176 + -0.3 977,218 + QEN71_RS04445 0.11 -0.9 977,219 - QEN71_RS04445 0.11 -0.8 977,232 - QEN71_RS04445 0.12 -0.1 977,232 - QEN71_RS04445 0.12 -0.3 977,288 - QEN71_RS04445 0.17 +3.0 977,359 + QEN71_RS04445 0.23 -1.0 977,360 - QEN71_RS04445 0.23 -0.3 977,453 + QEN71_RS04445 0.31 +0.0 977,476 + QEN71_RS04445 0.33 +0.0 977,477 - QEN71_RS04445 0.33 +0.2 977,506 + QEN71_RS04445 0.35 +0.0 977,506 + QEN71_RS04445 0.35 +0.0 977,507 - QEN71_RS04445 0.35 -0.3 977,590 + QEN71_RS04445 0.42 +1.0 977,693 - QEN71_RS04445 0.51 -0.8 977,818 + QEN71_RS04445 0.61 -1.4 977,854 + QEN71_RS04445 0.64 -0.4 977,854 + QEN71_RS04445 0.64 +1.0 977,854 + QEN71_RS04445 0.64 -2.3 977,854 + QEN71_RS04445 0.64 +0.6 977,855 - QEN71_RS04445 0.64 -0.3 977,855 - QEN71_RS04445 0.64 +0.0 977,855 - QEN71_RS04445 0.64 -0.7 977,855 - QEN71_RS04445 0.64 -0.3 977,890 + QEN71_RS04445 0.67 -0.8 977,890 + QEN71_RS04445 0.67 +0.2 977,890 + QEN71_RS04445 0.67 +0.0 977,890 + QEN71_RS04445 0.67 -1.4 977,890 + QEN71_RS04445 0.67 -1.0 977,890 + QEN71_RS04445 0.67 -2.0 977,890 + QEN71_RS04445 0.67 +1.5 977,891 - QEN71_RS04445 0.67 -0.3 977,891 - QEN71_RS04445 0.67 -1.1 977,891 - QEN71_RS04445 0.67 +1.3 977,891 - QEN71_RS04445 0.67 -1.4 977,891 - QEN71_RS04445 0.67 +1.6 977,891 - QEN71_RS04445 0.67 -0.8 977,891 - QEN71_RS04445 0.67 -0.4 977,891 - QEN71_RS04445 0.67 +0.0 977,891 - QEN71_RS04445 0.67 +0.2 977,891 - QEN71_RS04445 0.67 -2.8 977,968 + QEN71_RS04445 0.73 +0.2 977,968 + QEN71_RS04445 0.73 -0.3 977,969 - QEN71_RS04445 0.74 -0.3 977,969 - QEN71_RS04445 0.74 +0.0 978,049 + QEN71_RS04445 0.80 -0.5 978,049 + QEN71_RS04445 0.80 +1.0 978,049 + QEN71_RS04445 0.80 -2.5 978,050 - QEN71_RS04445 0.80 -0.3 978,050 - QEN71_RS04445 0.80 +0.8 978,050 - QEN71_RS04445 0.80 -1.5 978,050 - QEN71_RS04445 0.80 +0.0 978,050 - QEN71_RS04445 0.80 +1.2 978,118 + QEN71_RS04445 0.86 -0.5 978,118 + QEN71_RS04445 0.86 +0.3 978,118 + QEN71_RS04445 0.86 -0.3 978,118 + QEN71_RS04445 0.86 -1.0 978,119 - QEN71_RS04445 0.86 +0.0 978,220 + -0.5 978,220 + +0.7 978,220 + -1.0 978,221 - -0.3 978,221 - -1.4 978,221 - +0.6 978,230 - -0.5 978,283 + +0.0 978,283 + -0.6 978,284 - -0.7 978,284 - +0.5 978,337 + +1.2 978,337 + -0.3 978,338 - +1.7 978,347 + -1.0 978,347 + -0.0 978,347 + -1.1 978,347 + +0.4 978,347 + -0.6 978,347 + +0.8 978,347 + +2.0 978,347 + -0.5 978,347 + +1.5 978,347 + +0.4 978,347 + -0.9 978,348 - +1.2 978,348 - +0.3 978,348 - -0.2 978,348 - +0.0 978,348 - -1.8 978,348 - -2.7 978,348 - +0.0 978,349 + +0.8 978,349 + +2.3 978,349 + +1.1 978,349 + +0.1 978,349 + -0.4 978,349 + +0.0 978,349 + -0.8 978,350 - +0.3 978,350 - -0.3 978,350 - +0.2 978,350 - +0.9 978,350 - +0.2 978,350 - +0.3 978,388 + -0.2 978,389 - -0.3 978,390 + -0.1 978,390 + -0.1 978,390 + +0.3 978,390 + +0.0 978,435 + -0.0 978,581 + QEN71_RS04450 0.15 -0.3 978,911 + QEN71_RS04450 0.65 -1.5 978,911 + QEN71_RS04450 0.65 -0.6
Or see this region's nucleotide sequence