Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00940

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00935 and QEN71_RS00940 are separated by 33 nucleotidesQEN71_RS00940 and QEN71_RS00945 are separated by 600 nucleotides QEN71_RS00935: QEN71_RS00935 - EAL domain-containing protein, at 210,919 to 212,193 _RS00935 QEN71_RS00940: QEN71_RS00940 - copper homeostasis protein CutC, at 212,227 to 212,916 _RS00940 QEN71_RS00945: QEN71_RS00945 - indolepyruvate ferredoxin oxidoreductase family protein, at 213,517 to 217,110 _RS00945 Position (kb) 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 211.369 kb on - strand, within QEN71_RS00935at 211.658 kb on + strand, within QEN71_RS00935at 211.658 kb on + strand, within QEN71_RS00935at 211.659 kb on - strand, within QEN71_RS00935at 211.659 kb on - strand, within QEN71_RS00935at 211.744 kb on + strand, within QEN71_RS00935at 211.745 kb on - strand, within QEN71_RS00935at 212.026 kb on + strand, within QEN71_RS00935at 212.026 kb on + strand, within QEN71_RS00935at 212.026 kb on + strand, within QEN71_RS00935at 212.027 kb on - strand, within QEN71_RS00935at 212.077 kb on + strandat 212.077 kb on + strandat 212.077 kb on + strandat 212.077 kb on + strandat 212.077 kb on + strandat 212.077 kb on + strandat 212.078 kb on - strandat 212.078 kb on - strandat 212.078 kb on - strandat 212.078 kb on - strandat 212.078 kb on - strandat 212.078 kb on - strandat 212.322 kb on + strand, within QEN71_RS00940at 212.499 kb on + strand, within QEN71_RS00940at 212.592 kb on + strand, within QEN71_RS00940at 212.592 kb on + strand, within QEN71_RS00940at 212.592 kb on + strand, within QEN71_RS00940at 212.593 kb on - strand, within QEN71_RS00940at 212.593 kb on - strand, within QEN71_RS00940at 212.593 kb on - strand, within QEN71_RS00940at 212.593 kb on - strand, within QEN71_RS00940at 212.668 kb on - strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.671 kb on - strand, within QEN71_RS00940at 212.671 kb on - strand, within QEN71_RS00940at 212.671 kb on - strand, within QEN71_RS00940at 212.671 kb on - strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.761 kb on - strand, within QEN71_RS00940at 212.817 kb on + strand, within QEN71_RS00940at 212.817 kb on + strand, within QEN71_RS00940at 212.856 kb on + strandat 212.856 kb on + strandat 212.856 kb on + strandat 212.915 kb on - strandat 212.915 kb on - strandat 212.973 kb on - strandat 213.237 kb on + strandat 213.237 kb on + strandat 213.237 kb on + strandat 213.296 kb on + strandat 213.296 kb on + strandat 213.323 kb on - strandat 213.530 kb on - strandat 213.564 kb on + strandat 213.565 kb on - strandat 213.565 kb on - strandat 213.565 kb on - strandat 213.649 kb on - strandat 213.649 kb on - strandat 213.663 kb on + strandat 213.736 kb on - strandat 213.768 kb on + strandat 213.768 kb on + strandat 213.768 kb on + strandat 213.769 kb on - strandat 213.769 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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211,369 - QEN71_RS00935 0.35 +0.1
211,658 + QEN71_RS00935 0.58 +1.0
211,658 + QEN71_RS00935 0.58 +0.3
211,659 - QEN71_RS00935 0.58 +1.3
211,659 - QEN71_RS00935 0.58 +2.1
211,744 + QEN71_RS00935 0.65 -0.5
211,745 - QEN71_RS00935 0.65 -0.0
212,026 + QEN71_RS00935 0.87 -0.1
212,026 + QEN71_RS00935 0.87 -1.5
212,026 + QEN71_RS00935 0.87 +0.3
212,027 - QEN71_RS00935 0.87 -0.9
212,077 + -0.0
212,077 + -0.0
212,077 + -0.3
212,077 + -0.6
212,077 + -0.2
212,077 + +0.4
212,078 - -0.7
212,078 - +0.3
212,078 - -0.3
212,078 - -0.5
212,078 - +0.6
212,078 - -0.0
212,322 + QEN71_RS00940 0.14 +0.1
212,499 + QEN71_RS00940 0.39 -0.6
212,592 + QEN71_RS00940 0.53 -0.0
212,592 + QEN71_RS00940 0.53 +0.9
212,592 + QEN71_RS00940 0.53 +1.3
212,593 - QEN71_RS00940 0.53 -0.7
212,593 - QEN71_RS00940 0.53 -0.8
212,593 - QEN71_RS00940 0.53 +0.1
212,593 - QEN71_RS00940 0.53 -0.5
212,668 - QEN71_RS00940 0.64 -0.2
212,670 + QEN71_RS00940 0.64 +1.0
212,670 + QEN71_RS00940 0.64 -1.3
212,670 + QEN71_RS00940 0.64 -2.0
212,670 + QEN71_RS00940 0.64 +0.8
212,670 + QEN71_RS00940 0.64 +0.7
212,670 + QEN71_RS00940 0.64 +0.2
212,670 + QEN71_RS00940 0.64 -0.5
212,671 - QEN71_RS00940 0.64 -1.1
212,671 - QEN71_RS00940 0.64 -0.2
212,671 - QEN71_RS00940 0.64 +0.1
212,671 - QEN71_RS00940 0.64 +1.9
212,760 + QEN71_RS00940 0.77 -0.1
212,760 + QEN71_RS00940 0.77 +0.2
212,760 + QEN71_RS00940 0.77 +0.0
212,760 + QEN71_RS00940 0.77 +2.5
212,760 + QEN71_RS00940 0.77 +0.2
212,761 - QEN71_RS00940 0.77 +0.6
212,817 + QEN71_RS00940 0.86 +1.3
212,817 + QEN71_RS00940 0.86 -0.1
212,856 + +0.1
212,856 + +2.9
212,856 + -1.0
212,915 - -1.3
212,915 - -1.7
212,973 - +0.1
213,237 + -1.9
213,237 + +0.5
213,237 + +1.0
213,296 + +1.4
213,296 + +1.2
213,323 - +0.4
213,530 - +0.3
213,564 + +0.5
213,565 - -0.3
213,565 - -0.0
213,565 - +1.0
213,649 - -0.2
213,649 - -0.3
213,663 + -2.8
213,736 - +0.1
213,768 + -1.5
213,768 + +0.7
213,768 + +0.5
213,769 - +0.1
213,769 - -0.2

Or see this region's nucleotide sequence