Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04023

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
4,510,041	+				-1.1
4,510,043	-				+3.3
4,510,092	+				+0.7
4,510,102	+				-1.7
4,510,110	-				+0.7
4,510,186	+				-0.9
4,510,196	+				-2.2
4,510,204	-				+0.1
4,510,204	-				+1.9
4,510,206	+				+0.1
4,510,206	+				+1.1
4,510,206	+				+3.3
4,510,206	+				+0.6
4,510,206	+				-0.8
4,510,206	+				-2.4
4,510,206	+				-2.1
4,510,207	-				-1.5
4,510,214	-				-0.2
4,510,214	-				-0.9
4,510,214	-				+0.1
4,510,214	-				-1.6
4,510,214	-				-1.9
4,510,214	-				-0.6
4,510,214	-				-2.5
4,510,214	-				+0.9
4,510,296	+		MIT1002_04022	0.18	+3.2
4,510,298	+		MIT1002_04022	0.19	-0.9
4,510,306	+		MIT1002_04022	0.20	-0.5
4,510,308	+		MIT1002_04022	0.20	-0.4
4,510,316	-		MIT1002_04022	0.21	-0.4
4,510,347	+		MIT1002_04022	0.25	-4.5
4,510,349	-		MIT1002_04022	0.25	-0.6
4,510,365	+		MIT1002_04022	0.28	+1.2
4,510,401	+		MIT1002_04022	0.33	-0.4
4,510,403	-		MIT1002_04022	0.33	-3.7
4,510,421	-		MIT1002_04022	0.35	-4.2
4,510,468	-		MIT1002_04022	0.42	-0.7
4,510,468	-		MIT1002_04022	0.42	-1.7
4,510,489	-		MIT1002_04022	0.44	+1.0
4,510,489	-		MIT1002_04022	0.44	-0.1
4,510,501	+		MIT1002_04022	0.46	-0.9
4,510,555	-		MIT1002_04022	0.53	-0.7
4,510,562	-		MIT1002_04022	0.54	-0.3
4,510,571	+		MIT1002_04022	0.56	-1.5
4,510,657	+		MIT1002_04022	0.67	+0.2
4,510,669	+		MIT1002_04022	0.69	-2.4
4,510,695	-		MIT1002_04022	0.73	-0.1
4,510,708	+		MIT1002_04022	0.74	-3.4
4,510,711	-		MIT1002_04022	0.75	-3.7
4,510,750	-		MIT1002_04022	0.80	+1.1
4,510,829	-				+0.1
4,510,851	-				-0.5
4,510,935	+				+0.1
4,510,950	+				+0.5
4,510,965	+				-0.5
4,510,997	+				-0.2
4,511,015	-				-2.5
4,511,048	+				+0.1
4,511,050	-				+0.4
4,511,063	-				-0.6
4,511,086	-				+0.4
4,511,191	+		MIT1002_04023	0.15	-0.1
4,511,273	-		MIT1002_04023	0.21	-4.6
4,511,291	+		MIT1002_04023	0.22	-1.1
4,511,378	+		MIT1002_04023	0.29	+0.3
4,511,378	+		MIT1002_04023	0.29	-2.2
4,511,378	+		MIT1002_04023	0.29	-0.8
4,511,378	+		MIT1002_04023	0.29	-0.2
4,511,386	+		MIT1002_04023	0.29	-2.2
4,511,386	-		MIT1002_04023	0.29	-2.8
4,511,386	-		MIT1002_04023	0.29	-2.2
4,511,391	-		MIT1002_04023	0.29	+1.0
4,511,457	-		MIT1002_04023	0.34	+1.0
4,511,517	-		MIT1002_04023	0.39	+0.3
4,511,574	-		MIT1002_04023	0.43	-1.2
4,511,579	-		MIT1002_04023	0.43	+0.6
4,511,587	-		MIT1002_04023	0.44	-3.0
4,511,618	-		MIT1002_04023	0.46	-2.7
4,511,629	-		MIT1002_04023	0.47	-1.2
4,511,645	+		MIT1002_04023	0.48	-1.7
4,511,645	+		MIT1002_04023	0.48	+3.0
4,511,715	+		MIT1002_04023	0.54	-0.0
4,511,743	+		MIT1002_04023	0.56	-0.0
4,511,746	-		MIT1002_04023	0.56	+2.4
4,511,746	-		MIT1002_04023	0.56	-1.2
4,511,838	-		MIT1002_04023	0.63	-3.2
4,511,898	+		MIT1002_04023	0.67	+0.9
4,511,904	+		MIT1002_04023	0.68	-1.8
4,511,904	+		MIT1002_04023	0.68	+1.3
4,511,904	+		MIT1002_04023	0.68	+1.1
4,511,904	+		MIT1002_04023	0.68	-0.7
4,511,904	+		MIT1002_04023	0.68	+0.5
4,511,904	+		MIT1002_04023	0.68	+0.5
4,511,912	-		MIT1002_04023	0.68	-2.8
4,511,912	-		MIT1002_04023	0.68	-1.9
4,511,912	-		MIT1002_04023	0.68	+1.1
4,511,912	-		MIT1002_04023	0.68	+1.5
4,511,954	+		MIT1002_04023	0.71	-0.3
4,511,971	-		MIT1002_04023	0.73	-1.8
4,511,986	+		MIT1002_04023	0.74	+0.7
4,512,010	+		MIT1002_04023	0.75	-3.6
4,512,015	+		MIT1002_04023	0.76	+1.9
4,512,017	+		MIT1002_04023	0.76	+0.0
4,512,025	-		MIT1002_04023	0.77	+2.6
4,512,031	-		MIT1002_04023	0.77	+1.4
4,512,031	-		MIT1002_04023	0.77	+0.1
4,512,086	+		MIT1002_04023	0.81	+0.2
4,512,086	+		MIT1002_04023	0.81	+1.9
4,512,109	-		MIT1002_04023	0.83	+0.2
4,512,143	+		MIT1002_04023	0.85	+0.1
4,512,203	-		MIT1002_04023	0.90	-1.7
4,512,234	-				+1.3
4,512,235	-				+0.6
4,512,350	+				+0.0
4,512,365	-				-1.2
4,512,383	-				+1.9
4,512,514	+				+1.3
4,512,546	+				+0.9
4,512,562	+				+0.7
4,512,620	-		MIT1002_04024	0.13	-0.4
4,512,625	+		MIT1002_04024	0.13	-0.9
4,512,625	+		MIT1002_04024	0.13	+0.5
4,512,685	+		MIT1002_04024	0.18	-1.6
4,512,747	+		MIT1002_04024	0.23	+0.2
4,512,748	-		MIT1002_04024	0.23	-2.1
4,512,755	-		MIT1002_04024	0.24	+1.3
4,512,799	+		MIT1002_04024	0.27	+1.1
4,512,817	+		MIT1002_04024	0.29	-0.0
4,512,820	-		MIT1002_04024	0.29	+0.3
4,512,820	-		MIT1002_04024	0.29	-0.5
4,512,865	-		MIT1002_04024	0.33	+0.9
4,512,867	-		MIT1002_04024	0.33	+1.3
4,512,930	+		MIT1002_04024	0.38	-0.4
4,512,984	-		MIT1002_04024	0.43	+1.0
4,512,997	+		MIT1002_04024	0.44	-1.1
4,513,005	-		MIT1002_04024	0.44	+0.5
4,513,005	-		MIT1002_04024	0.44	+0.6
4,513,061	+		MIT1002_04024	0.49	-3.0
4,513,074	-		MIT1002_04024	0.50	+1.7
4,513,102	+		MIT1002_04024	0.52	-0.8
4,513,131	+		MIT1002_04024	0.55	+0.8
4,513,215	+		MIT1002_04024	0.61	-3.1
4,513,217	+		MIT1002_04024	0.62	-0.4
4,513,220	-		MIT1002_04024	0.62	-1.4
4,513,248	+		MIT1002_04024	0.64	-1.1
4,513,249	-		MIT1002_04024	0.64	-0.8
4,513,249	-		MIT1002_04024	0.64	-1.4
4,513,249	-		MIT1002_04024	0.64	-1.0
4,513,256	-		MIT1002_04024	0.65	+0.3
4,513,292	-		MIT1002_04024	0.68	+0.1
4,513,292	-		MIT1002_04024	0.68	-1.7
4,513,294	+		MIT1002_04024	0.68	-1.1