Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03812

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
4,256,701	-		MIT1002_03811	0.30	-1.1
4,256,714	-		MIT1002_03811	0.31	+0.0
4,256,727	+		MIT1002_03811	0.32	+1.4
4,256,750	+		MIT1002_03811	0.33	-2.5
4,256,775	+		MIT1002_03811	0.35	+0.7
4,256,775	+		MIT1002_03811	0.35	+2.2
4,256,785	+		MIT1002_03811	0.36	-0.1
4,256,916	+		MIT1002_03811	0.45	+1.1
4,256,916	-		MIT1002_03811	0.45	-0.8
4,257,002	+		MIT1002_03811	0.51	+1.3
4,257,010	-		MIT1002_03811	0.52	+0.8
4,257,048	-		MIT1002_03811	0.54	+0.6
4,257,084	-		MIT1002_03811	0.57	+0.1
4,257,116	+		MIT1002_03811	0.59	+0.0
4,257,116	+		MIT1002_03811	0.59	-1.7
4,257,116	+		MIT1002_03811	0.59	-0.4
4,257,116	+		MIT1002_03811	0.59	-1.7
4,257,124	-		MIT1002_03811	0.59	+0.7
4,257,124	-		MIT1002_03811	0.59	-0.4
4,257,124	-		MIT1002_03811	0.59	-1.0
4,257,124	-		MIT1002_03811	0.59	-1.6
4,257,124	-		MIT1002_03811	0.59	+0.4
4,257,124	-		MIT1002_03811	0.59	-0.6
4,257,131	-		MIT1002_03811	0.60	-1.8
4,257,133	+		MIT1002_03811	0.60	+0.3
4,257,133	+		MIT1002_03811	0.60	+1.1
4,257,141	-		MIT1002_03811	0.61	+2.3
4,257,152	+		MIT1002_03811	0.61	-3.1
4,257,168	+		MIT1002_03811	0.63	-1.1
4,257,185	-		MIT1002_03811	0.64	+2.1
4,257,235	-		MIT1002_03811	0.67	-0.5
4,257,336	+		MIT1002_03811	0.74	+0.3
4,257,336	-		MIT1002_03811	0.74	-1.7
4,257,349	-		MIT1002_03811	0.75	-2.9
4,257,357	+		MIT1002_03811	0.76	+1.6
4,257,357	+		MIT1002_03811	0.76	+1.3
4,257,362	+		MIT1002_03811	0.76	+1.4
4,257,365	-		MIT1002_03811	0.76	-1.8
4,257,462	+		MIT1002_03811	0.83	-0.1
4,257,523	-		MIT1002_03811	0.87	+0.0
4,257,528	+		MIT1002_03811	0.88	-3.8
4,257,529	-		MIT1002_03811	0.88	-2.8
4,257,557	+		MIT1002_03811	0.90	+1.3
4,257,598	+				-3.0
4,257,601	-				-1.1
4,257,601	-				-1.1
4,257,601	-				-0.3
4,257,606	-				+1.9
4,257,618	+				-1.8
4,257,647	+				+1.6
4,257,655	-				-1.4
4,257,655	-				-4.1
4,257,655	-				-1.9
4,257,660	+				-0.8
4,257,660	+				+1.0
4,257,668	-				-1.3
4,257,668	-				+2.9
4,257,678	-				+0.9
4,257,723	-				+1.0
4,257,725	+				-0.3
4,257,740	+				+0.4
4,257,762	+				-1.3
4,257,762	+				-0.6
4,257,767	+				-2.9
4,257,772	+				-0.7
4,257,772	+				-0.4
4,257,777	+				+2.1
4,257,785	-				-0.7
4,257,785	-				-0.3
4,257,785	-				-0.4
4,257,806	-		MIT1002_03812	0.11	+0.4
4,257,829	+		MIT1002_03812	0.13	-1.3
4,257,829	+		MIT1002_03812	0.13	-2.5
4,257,829	+		MIT1002_03812	0.13	+1.4
4,257,837	-		MIT1002_03812	0.14	-2.3
4,257,844	+		MIT1002_03812	0.14	-1.5
4,257,844	+		MIT1002_03812	0.14	+1.9
4,257,869	+		MIT1002_03812	0.17	+1.6
4,257,871	+		MIT1002_03812	0.17	+0.5
4,257,923	-		MIT1002_03812	0.21	-0.1
4,258,162	+		MIT1002_03812	0.43	-0.4
4,258,180	-		MIT1002_03812	0.44	+1.5
4,258,180	-		MIT1002_03812	0.44	-0.6
4,258,253	+		MIT1002_03812	0.51	-1.7
4,258,253	+		MIT1002_03812	0.51	+1.0
4,258,322	+		MIT1002_03812	0.57	-1.6
4,258,344	-		MIT1002_03812	0.59	+0.5
4,258,495	+		MIT1002_03812	0.72	+0.5
4,258,495	+		MIT1002_03812	0.72	+1.1
4,258,503	-		MIT1002_03812	0.73	-1.5
4,258,503	-		MIT1002_03812	0.73	-0.5
4,258,518	+		MIT1002_03812	0.74	+2.2
4,258,549	-		MIT1002_03812	0.77	+1.6
4,258,615	-		MIT1002_03812	0.83	+1.8
4,258,628	-		MIT1002_03812	0.84	+0.7
4,258,709	+				+0.6
4,258,717	-				+1.1
4,258,775	-				+0.9
4,258,896	-				+1.2
4,258,898	+				-1.1
4,258,906	+				-0.1
4,258,914	+				-0.5
4,259,014	+				-0.4
4,259,014	+				+1.5
4,259,020	-				+1.6
4,259,022	-				+2.7
4,259,081	-		MIT1002_03813	0.13	-3.2
4,259,143	+		MIT1002_03813	0.16	-2.4
4,259,151	-		MIT1002_03813	0.16	-0.8
4,259,152	-		MIT1002_03813	0.16	+1.2
4,259,168	-		MIT1002_03813	0.17	-0.7
4,259,187	-		MIT1002_03813	0.18	+0.5
4,259,224	+		MIT1002_03813	0.20	+1.2
4,259,224	+		MIT1002_03813	0.20	-0.2
4,259,230	-		MIT1002_03813	0.20	-0.4
4,259,232	-		MIT1002_03813	0.20	+0.6
4,259,232	-		MIT1002_03813	0.20	-1.4
4,259,232	-		MIT1002_03813	0.20	+0.4
4,259,232	-		MIT1002_03813	0.20	+1.6
4,259,239	+		MIT1002_03813	0.20	-0.2
4,259,239	+		MIT1002_03813	0.20	+0.3
4,259,247	-		MIT1002_03813	0.21	+1.3
4,259,303	-		MIT1002_03813	0.23	-0.2
4,259,303	-		MIT1002_03813	0.23	-0.4
4,259,321	+		MIT1002_03813	0.24	-1.6
4,259,323	+		MIT1002_03813	0.24	+2.5
4,259,329	-		MIT1002_03813	0.25	-1.3
4,259,331	-		MIT1002_03813	0.25	-1.4
4,259,337	-		MIT1002_03813	0.25	-0.9
4,259,400	-		MIT1002_03813	0.28	+2.1
4,259,431	-		MIT1002_03813	0.30	+0.1
4,259,436	+		MIT1002_03813	0.30	+1.7
4,259,436	+		MIT1002_03813	0.30	+2.1
4,259,436	+		MIT1002_03813	0.30	+0.5
4,259,436	+		MIT1002_03813	0.30	+1.9
4,259,436	+		MIT1002_03813	0.30	+1.6
4,259,444	-		MIT1002_03813	0.30	-0.7
4,259,455	+		MIT1002_03813	0.31	-0.9
4,259,608	+		MIT1002_03813	0.38	-0.8
4,259,608	+		MIT1002_03813	0.38	+0.6
4,259,616	-		MIT1002_03813	0.39	+1.1
4,259,616	-		MIT1002_03813	0.39	-3.4
4,259,616	-		MIT1002_03813	0.39	-0.9
4,259,617	-		MIT1002_03813	0.39	+0.8
4,259,631	+		MIT1002_03813	0.39	-0.5
4,259,639	-		MIT1002_03813	0.40	-0.7
4,259,655	+		MIT1002_03813	0.41	+1.0
4,259,663	-		MIT1002_03813	0.41	-1.2
4,259,677	-		MIT1002_03813	0.42	-0.9