Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03797 and MIT1002_03798 are separated by 161 nucleotides MIT1002_03798 and MIT1002_03799 are separated by 35 nucleotides MIT1002_03799 and MIT1002_03800 overlap by 11 nucleotides
MIT1002_03797: MIT1002_03797 - NADH pyrophosphatase, at 4,244,815 to 4,245,648
_03797
MIT1002_03798: MIT1002_03798 - Regulator of sigma D, at 4,245,810 to 4,246,274
_03798
MIT1002_03799: MIT1002_03799 - Zinc uptake regulation protein, at 4,246,310 to 4,246,783
_03799
MIT1002_03800: MIT1002_03800 - hypothetical protein, at 4,246,773 to 4,247,237
_03800
Position (kb) 4245
4246
4247 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4244.900 kb on + strand, within MIT1002_03797 at 4244.919 kb on + strand, within MIT1002_03797 at 4244.987 kb on + strand, within MIT1002_03797 at 4244.999 kb on + strand, within MIT1002_03797 at 4245.000 kb on + strand, within MIT1002_03797 at 4245.189 kb on + strand, within MIT1002_03797 at 4245.199 kb on + strand, within MIT1002_03797 at 4245.199 kb on + strand, within MIT1002_03797 at 4245.207 kb on - strand, within MIT1002_03797 at 4245.274 kb on - strand, within MIT1002_03797 at 4245.305 kb on - strand, within MIT1002_03797 at 4245.389 kb on - strand, within MIT1002_03797 at 4245.389 kb on - strand, within MIT1002_03797 at 4245.389 kb on - strand, within MIT1002_03797 at 4245.396 kb on + strand, within MIT1002_03797 at 4245.415 kb on + strand, within MIT1002_03797 at 4245.530 kb on - strand, within MIT1002_03797 at 4245.594 kb on - strand at 4245.611 kb on - strand at 4245.674 kb on - strand at 4245.693 kb on - strand at 4245.697 kb on + strand at 4245.755 kb on + strand at 4245.765 kb on + strand at 4245.765 kb on + strand at 4245.765 kb on + strand at 4245.765 kb on + strand at 4245.765 kb on + strand at 4245.765 kb on + strand at 4245.765 kb on + strand at 4245.765 kb on + strand at 4245.765 kb on + strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.821 kb on + strand at 4245.882 kb on - strand, within MIT1002_03798 at 4245.882 kb on - strand, within MIT1002_03798 at 4245.886 kb on + strand, within MIT1002_03798 at 4245.886 kb on + strand, within MIT1002_03798 at 4245.886 kb on + strand, within MIT1002_03798 at 4245.929 kb on - strand, within MIT1002_03798 at 4245.941 kb on + strand, within MIT1002_03798 at 4245.949 kb on - strand, within MIT1002_03798 at 4245.949 kb on - strand, within MIT1002_03798 at 4245.989 kb on - strand, within MIT1002_03798 at 4246.040 kb on - strand, within MIT1002_03798 at 4246.064 kb on + strand, within MIT1002_03798 at 4246.085 kb on + strand, within MIT1002_03798 at 4246.178 kb on - strand, within MIT1002_03798 at 4246.192 kb on + strand, within MIT1002_03798 at 4246.192 kb on + strand, within MIT1002_03798 at 4246.200 kb on - strand, within MIT1002_03798 at 4246.211 kb on + strand, within MIT1002_03798 at 4246.241 kb on - strand at 4246.268 kb on - strand at 4246.277 kb on - strand at 4246.292 kb on + strand at 4246.300 kb on - strand at 4246.342 kb on + strand at 4246.383 kb on + strand, within MIT1002_03799 at 4246.383 kb on + strand, within MIT1002_03799 at 4246.391 kb on - strand, within MIT1002_03799 at 4246.431 kb on + strand, within MIT1002_03799 at 4246.439 kb on - strand, within MIT1002_03799 at 4246.441 kb on + strand, within MIT1002_03799 at 4246.473 kb on - strand, within MIT1002_03799 at 4246.587 kb on - strand, within MIT1002_03799 at 4246.654 kb on - strand, within MIT1002_03799 at 4246.681 kb on - strand, within MIT1002_03799 at 4246.701 kb on + strand, within MIT1002_03799 at 4246.704 kb on + strand, within MIT1002_03799 at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.809 kb on + strand at 4246.902 kb on - strand, within MIT1002_03800 at 4246.921 kb on + strand, within MIT1002_03800 at 4246.921 kb on + strand, within MIT1002_03800 at 4246.921 kb on + strand, within MIT1002_03800 at 4246.921 kb on + strand, within MIT1002_03800 at 4246.929 kb on - strand, within MIT1002_03800 at 4246.936 kb on + strand, within MIT1002_03800 at 4246.944 kb on - strand, within MIT1002_03800 at 4246.973 kb on + strand, within MIT1002_03800 at 4246.975 kb on + strand, within MIT1002_03800 at 4247.003 kb on - strand, within MIT1002_03800 at 4247.093 kb on + strand, within MIT1002_03800 at 4247.094 kb on + strand, within MIT1002_03800 at 4247.125 kb on - strand, within MIT1002_03800 at 4247.167 kb on - strand, within MIT1002_03800 at 4247.202 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 4,244,900 + MIT1002_03797 0.10 +0.9 4,244,919 + MIT1002_03797 0.12 -1.4 4,244,987 + MIT1002_03797 0.21 +0.0 4,244,999 + MIT1002_03797 0.22 +0.7 4,245,000 + MIT1002_03797 0.22 -2.8 4,245,189 + MIT1002_03797 0.45 +0.1 4,245,199 + MIT1002_03797 0.46 -1.3 4,245,199 + MIT1002_03797 0.46 +0.5 4,245,207 - MIT1002_03797 0.47 +1.6 4,245,274 - MIT1002_03797 0.55 -0.5 4,245,305 - MIT1002_03797 0.59 +1.1 4,245,389 - MIT1002_03797 0.69 -1.7 4,245,389 - MIT1002_03797 0.69 +0.7 4,245,389 - MIT1002_03797 0.69 +0.2 4,245,396 + MIT1002_03797 0.70 +0.3 4,245,415 + MIT1002_03797 0.72 -3.4 4,245,530 - MIT1002_03797 0.86 +1.7 4,245,594 - -1.9 4,245,611 - +1.7 4,245,674 - -1.7 4,245,693 - +0.4 4,245,697 + +0.0 4,245,755 + +1.0 4,245,765 + +0.7 4,245,765 + -0.7 4,245,765 + +2.1 4,245,765 + +0.9 4,245,765 + +0.9 4,245,765 + -0.1 4,245,765 + +2.2 4,245,765 + -0.6 4,245,765 + +0.4 4,245,773 - +0.7 4,245,773 - +1.0 4,245,773 - +1.0 4,245,773 - -2.3 4,245,773 - -1.3 4,245,773 - -3.0 4,245,773 - -0.4 4,245,773 - +0.5 4,245,773 - -2.1 4,245,773 - -0.3 4,245,773 - +0.3 4,245,773 - +0.0 4,245,821 + +1.2 4,245,882 - MIT1002_03798 0.15 -1.4 4,245,882 - MIT1002_03798 0.15 -2.8 4,245,886 + MIT1002_03798 0.16 +0.1 4,245,886 + MIT1002_03798 0.16 -0.9 4,245,886 + MIT1002_03798 0.16 -0.2 4,245,929 - MIT1002_03798 0.26 +0.4 4,245,941 + MIT1002_03798 0.28 +1.3 4,245,949 - MIT1002_03798 0.30 +0.6 4,245,949 - MIT1002_03798 0.30 +0.6 4,245,989 - MIT1002_03798 0.38 -3.0 4,246,040 - MIT1002_03798 0.49 +1.5 4,246,064 + MIT1002_03798 0.55 -1.7 4,246,085 + MIT1002_03798 0.59 +1.4 4,246,178 - MIT1002_03798 0.79 -0.9 4,246,192 + MIT1002_03798 0.82 +0.8 4,246,192 + MIT1002_03798 0.82 -3.0 4,246,200 - MIT1002_03798 0.84 +1.3 4,246,211 + MIT1002_03798 0.86 -3.9 4,246,241 - -2.1 4,246,268 - -2.6 4,246,277 - -0.8 4,246,292 + -1.9 4,246,300 - +0.1 4,246,342 + +1.5 4,246,383 + MIT1002_03799 0.15 -1.9 4,246,383 + MIT1002_03799 0.15 -1.3 4,246,391 - MIT1002_03799 0.17 -1.1 4,246,431 + MIT1002_03799 0.26 -3.3 4,246,439 - MIT1002_03799 0.27 -2.2 4,246,441 + MIT1002_03799 0.28 -1.8 4,246,473 - MIT1002_03799 0.34 +1.4 4,246,587 - MIT1002_03799 0.58 -2.1 4,246,654 - MIT1002_03799 0.73 -3.5 4,246,681 - MIT1002_03799 0.78 -2.7 4,246,701 + MIT1002_03799 0.82 -1.6 4,246,704 + MIT1002_03799 0.83 -1.9 4,246,757 + -1.0 4,246,757 + -2.7 4,246,757 + +1.5 4,246,757 + -0.9 4,246,757 + -1.7 4,246,757 + -0.1 4,246,757 + -0.3 4,246,757 + -2.4 4,246,757 + -2.4 4,246,757 + -1.6 4,246,757 + -1.6 4,246,757 + -3.1 4,246,757 + -1.3 4,246,757 + -2.2 4,246,757 + -2.6 4,246,765 - -4.4 4,246,765 - +1.6 4,246,765 - +1.0 4,246,765 - +0.3 4,246,765 - -0.7 4,246,765 - -0.3 4,246,765 - -0.7 4,246,765 - +0.4 4,246,765 - -2.0 4,246,765 - +1.5 4,246,765 - +0.8 4,246,765 - -2.0 4,246,765 - -2.0 4,246,765 - -2.4 4,246,765 - +0.5 4,246,765 - -1.5 4,246,765 - +1.5 4,246,765 - -1.6 4,246,765 - -1.7 4,246,765 - -3.0 4,246,809 + -0.5 4,246,902 - MIT1002_03800 0.28 -0.5 4,246,921 + MIT1002_03800 0.32 +1.1 4,246,921 + MIT1002_03800 0.32 -0.5 4,246,921 + MIT1002_03800 0.32 -0.0 4,246,921 + MIT1002_03800 0.32 +0.1 4,246,929 - MIT1002_03800 0.34 +0.3 4,246,936 + MIT1002_03800 0.35 +0.1 4,246,944 - MIT1002_03800 0.37 +0.3 4,246,973 + MIT1002_03800 0.43 +1.7 4,246,975 + MIT1002_03800 0.43 +0.5 4,247,003 - MIT1002_03800 0.49 +0.2 4,247,093 + MIT1002_03800 0.69 -1.9 4,247,094 + MIT1002_03800 0.69 -3.3 4,247,125 - MIT1002_03800 0.76 +1.1 4,247,167 - MIT1002_03800 0.85 +0.9 4,247,202 + -1.4
Or see this region's nucleotide sequence