Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03765

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
4,207,787	+		MIT1002_03764	0.71	-0.3
4,207,820	-		MIT1002_03764	0.72	+0.4
4,207,858	+		MIT1002_03764	0.74	+0.3
4,207,868	-		MIT1002_03764	0.74	-3.7
4,207,898	-		MIT1002_03764	0.75	-0.5
4,207,907	+		MIT1002_03764	0.75	+0.3
4,207,915	-		MIT1002_03764	0.76	-0.6
4,207,915	-		MIT1002_03764	0.76	-2.0
4,207,939	+		MIT1002_03764	0.77	+0.6
4,207,939	+		MIT1002_03764	0.77	-0.4
4,207,939	+		MIT1002_03764	0.77	+1.6
4,207,939	+		MIT1002_03764	0.77	-0.1
4,207,947	-		MIT1002_03764	0.77	+0.4
4,208,027	-		MIT1002_03764	0.80	-0.1
4,208,052	+		MIT1002_03764	0.81	-0.9
4,208,061	+		MIT1002_03764	0.81	+0.1
4,208,094	-		MIT1002_03764	0.83	-0.8
4,208,105	+		MIT1002_03764	0.83	-0.2
4,208,171	+		MIT1002_03764	0.85	+0.6
4,208,262	+		MIT1002_03764	0.89	+0.4
4,208,262	-		MIT1002_03764	0.89	+2.6
4,208,299	+				-0.3
4,208,309	+				-1.3
4,208,348	+				+1.8
4,208,363	+				-0.6
4,208,371	-				-1.9
4,208,441	+				+0.5
4,208,526	+				-0.2
4,208,550	+				-2.1
4,208,556	-				-2.9
4,208,626	-				-1.1
4,208,644	-				-0.6
4,208,732	+				-0.0
4,208,767	+				-1.3
4,208,775	-				-2.7
4,208,814	-				-2.1
4,208,943	+		MIT1002_03765	0.14	+0.7
4,208,953	+		MIT1002_03765	0.15	-0.7
4,208,975	-		MIT1002_03765	0.17	-0.5
4,209,111	+		MIT1002_03765	0.28	-0.4
4,209,113	+		MIT1002_03765	0.29	-2.8
4,209,119	-		MIT1002_03765	0.29	-0.4
4,209,147	+		MIT1002_03765	0.31	+1.5
4,209,217	-		MIT1002_03765	0.37	-2.8
4,209,323	+		MIT1002_03765	0.46	-1.8
4,209,367	-		MIT1002_03765	0.50	-0.1
4,209,368	-		MIT1002_03765	0.50	-1.7
4,209,398	+		MIT1002_03765	0.53	+1.0
4,209,427	+		MIT1002_03765	0.55	-1.3
4,209,445	-		MIT1002_03765	0.57	+0.9
4,209,554	-		MIT1002_03765	0.66	-0.1
4,209,559	-		MIT1002_03765	0.66	+1.5
4,209,559	-		MIT1002_03765	0.66	+1.6
4,209,598	+		MIT1002_03765	0.70	-3.2
4,209,626	+		MIT1002_03765	0.72	-2.8
4,209,695	+		MIT1002_03765	0.78	-2.0
4,209,695	+		MIT1002_03765	0.78	-1.5
4,209,695	+		MIT1002_03765	0.78	-2.4
4,209,697	-		MIT1002_03765	0.78	+0.3
4,209,703	-		MIT1002_03765	0.79	-0.9
4,209,703	-		MIT1002_03765	0.79	+0.4
4,209,726	+		MIT1002_03765	0.81	-0.7
4,209,770	+		MIT1002_03765	0.84	+1.7
4,209,770	+		MIT1002_03765	0.84	+2.6
4,209,770	+		MIT1002_03765	0.84	-3.0
4,209,770	+		MIT1002_03765	0.84	+1.2
4,209,778	-		MIT1002_03765	0.85	+0.8
4,209,778	-		MIT1002_03765	0.85	-0.5
4,209,778	-		MIT1002_03765	0.85	+2.2
4,209,825	-		MIT1002_03765	0.89	+1.1
4,209,847	-				-0.4
4,209,852	+				-0.5
4,209,935	+				+1.7
4,209,935	+				-2.6
4,209,943	-				+0.6
4,209,945	+				+1.9
4,209,945	+				-1.5
4,209,945	+				+2.2
4,209,950	+				+0.5
4,209,950	+				-0.9
4,209,958	-				-0.4
4,209,958	-				+1.3
4,209,982	+				-0.4
4,210,030	+				-0.3
4,210,051	+				-1.9
4,210,064	-				+1.6
4,210,113	+				+0.0
4,210,184	+				-2.3
4,210,184	+				-1.1
4,210,184	+				-1.6
4,210,184	+				-1.5
4,210,184	+				-0.0
4,210,184	+				-0.1
4,210,184	+				+1.1
4,210,184	+				-0.7
4,210,184	+				-0.4
4,210,184	+				+1.7
4,210,184	+				-1.9
4,210,189	+		MIT1002_03766	0.10	-0.4
4,210,192	-		MIT1002_03766	0.10	-1.4
4,210,192	-		MIT1002_03766	0.10	-0.2
4,210,192	-		MIT1002_03766	0.10	-0.3
4,210,192	-		MIT1002_03766	0.10	+2.3
4,210,197	-		MIT1002_03766	0.11	-1.0
4,210,203	+		MIT1002_03766	0.12	+0.7
4,210,211	-		MIT1002_03766	0.12	+0.2
4,210,211	-		MIT1002_03766	0.12	-0.1
4,210,253	+		MIT1002_03766	0.17	-3.5
4,210,282	-		MIT1002_03766	0.20	+0.2
4,210,291	+		MIT1002_03766	0.21	+0.9
4,210,309	-		MIT1002_03766	0.23	-2.9
4,210,313	+		MIT1002_03766	0.23	+1.3
4,210,346	-		MIT1002_03766	0.27	+2.0
4,210,414	+		MIT1002_03766	0.34	+1.2
4,210,422	-		MIT1002_03766	0.35	+0.0
4,210,422	-		MIT1002_03766	0.35	+0.3
4,210,422	-		MIT1002_03766	0.35	-2.5
4,210,428	+		MIT1002_03766	0.35	-0.2
4,210,428	+		MIT1002_03766	0.35	-0.9
4,210,428	+		MIT1002_03766	0.35	-2.9
4,210,428	+		MIT1002_03766	0.35	-2.5
4,210,428	+		MIT1002_03766	0.35	-1.1
4,210,436	-		MIT1002_03766	0.36	+2.9
4,210,436	-		MIT1002_03766	0.36	-0.4
4,210,436	-		MIT1002_03766	0.36	+0.4
4,210,436	-		MIT1002_03766	0.36	-3.0
4,210,445	-		MIT1002_03766	0.37	+0.1
4,210,531	+		MIT1002_03766	0.46	+0.6
4,210,559	-		MIT1002_03766	0.49	+1.6
4,210,577	+		MIT1002_03766	0.51	+0.8
4,210,577	+		MIT1002_03766	0.51	+1.5
4,210,577	+		MIT1002_03766	0.51	-2.1
4,210,583	+		MIT1002_03766	0.52	-3.3
4,210,623	+		MIT1002_03766	0.56	+0.2
4,210,738	+		MIT1002_03766	0.68	-0.0
4,210,743	+		MIT1002_03766	0.69	-0.1
4,210,751	-		MIT1002_03766	0.70	-0.4
4,210,841	+		MIT1002_03766	0.79	-3.2
4,210,844	-		MIT1002_03766	0.80	-1.5