Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03450

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
3,857,345	+		MIT1002_03449	0.31	+0.5
3,857,352	+		MIT1002_03449	0.31	+1.2
3,857,352	-		MIT1002_03449	0.31	-0.1
3,857,461	-		MIT1002_03449	0.39	+1.3
3,857,610	+		MIT1002_03449	0.49	-1.5
3,857,618	-		MIT1002_03449	0.50	+1.5
3,857,662	+		MIT1002_03449	0.53	+2.2
3,857,662	+		MIT1002_03449	0.53	-2.5
3,857,662	+		MIT1002_03449	0.53	+1.3
3,857,662	+		MIT1002_03449	0.53	+1.7
3,857,670	-		MIT1002_03449	0.54	+0.9
3,857,670	-		MIT1002_03449	0.54	-1.1
3,857,670	-		MIT1002_03449	0.54	-0.9
3,857,670	-		MIT1002_03449	0.54	-0.5
3,857,670	-		MIT1002_03449	0.54	-0.1
3,857,686	-		MIT1002_03449	0.55	+1.4
3,857,694	-		MIT1002_03449	0.55	-0.1
3,857,699	-		MIT1002_03449	0.56	-0.4
3,857,754	+		MIT1002_03449	0.59	-2.7
3,857,866	-		MIT1002_03449	0.67	+1.3
3,857,870	+		MIT1002_03449	0.68	-0.6
3,857,878	-		MIT1002_03449	0.68	+2.2
3,857,878	-		MIT1002_03449	0.68	-0.1
3,857,913	-		MIT1002_03449	0.71	+0.3
3,857,937	-		MIT1002_03449	0.72	-0.7
3,858,001	-		MIT1002_03449	0.77	+0.4
3,858,007	+		MIT1002_03449	0.77	+0.7
3,858,015	-		MIT1002_03449	0.78	-0.7
3,858,015	-		MIT1002_03449	0.78	-2.9
3,858,020	+		MIT1002_03449	0.78	+0.8
3,858,020	+		MIT1002_03449	0.78	+0.6
3,858,218	+				-0.1
3,858,335	-				+1.6
3,858,369	+				+1.3
3,858,459	+		MIT1002_03450	0.19	-0.2
3,858,479	-		MIT1002_03450	0.22	-1.2
3,858,662	-		MIT1002_03450	0.51	+1.0
3,858,777	+		MIT1002_03450	0.69	-4.2
3,858,919	+				-0.1
3,858,950	+				+0.9
3,858,958	-				-0.2
3,858,958	-				+2.7
3,858,958	-				-1.8
3,858,958	-				-0.1
3,859,040	+				+0.5
3,859,052	+				+0.8
3,859,061	+				+1.6
3,859,128	+				+2.3
3,859,198	-		MIT1002_03451	0.19	+1.7
3,859,209	+		MIT1002_03451	0.21	+0.4
3,859,445	-		MIT1002_03451	0.67	+0.4
3,859,609	+				+1.1
3,859,616	+				-0.1
3,859,621	+				-2.9
3,859,623	+				-0.0
3,859,629	-				-0.5
3,859,629	-				+0.4
3,859,629	-				+0.4
3,859,696	-				-0.6
3,859,698	-				-0.0
3,859,797	+				-0.1
3,859,880	+				-3.3
3,859,896	-		MIT1002_03452	0.11	-1.7
3,859,963	+		MIT1002_03452	0.17	+0.3
3,859,963	+		MIT1002_03452	0.17	-0.5
3,859,966	-		MIT1002_03452	0.17	-0.6
3,859,973	+		MIT1002_03452	0.18	+1.0