Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03430

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
3,831,662	-				-0.4
3,831,707	+				+0.7
3,831,707	+				+0.7
3,831,715	-				-3.2
3,831,766	+				-2.8
3,831,843	+				+0.2
3,831,848	+				-0.1
3,831,848	+				-3.3
3,831,848	+				-2.4
3,831,849	-				-1.0
3,831,851	-				-0.1
3,831,866	-				+1.3
3,831,873	-				-0.8
3,831,882	+				+1.5
3,831,900	-				-1.4
3,831,940	+				+0.4
3,831,940	+				-2.3
3,831,940	+				+1.2
3,832,045	-		MIT1002_03429	0.26	+0.0
3,832,098	+		MIT1002_03429	0.36	-3.0
3,832,098	+		MIT1002_03429	0.36	-0.5
3,832,133	+		MIT1002_03429	0.42	+1.7
3,832,138	+		MIT1002_03429	0.43	-0.1
3,832,143	+		MIT1002_03429	0.44	+2.1
3,832,143	+		MIT1002_03429	0.44	+0.3
3,832,143	+		MIT1002_03429	0.44	+0.3
3,832,143	+		MIT1002_03429	0.44	-0.5
3,832,143	+		MIT1002_03429	0.44	-1.6
3,832,143	+		MIT1002_03429	0.44	-0.1
3,832,143	+		MIT1002_03429	0.44	+0.4
3,832,143	+		MIT1002_03429	0.44	-0.1
3,832,143	+		MIT1002_03429	0.44	-0.2
3,832,143	+		MIT1002_03429	0.44	-1.3
3,832,143	+		MIT1002_03429	0.44	+0.5
3,832,143	+		MIT1002_03429	0.44	-1.7
3,832,143	+		MIT1002_03429	0.44	+0.5
3,832,143	+		MIT1002_03429	0.44	+0.8
3,832,143	+		MIT1002_03429	0.44	-0.7
3,832,143	+		MIT1002_03429	0.44	+1.0
3,832,143	+		MIT1002_03429	0.44	-0.6
3,832,143	+		MIT1002_03429	0.44	-0.0
3,832,143	+		MIT1002_03429	0.44	+1.2
3,832,143	+		MIT1002_03429	0.44	-0.2
3,832,146	-		MIT1002_03429	0.45	+3.5
3,832,151	-		MIT1002_03429	0.46	+1.6
3,832,151	-		MIT1002_03429	0.46	+1.7
3,832,151	-		MIT1002_03429	0.46	-0.1
3,832,151	-		MIT1002_03429	0.46	-0.5
3,832,151	-		MIT1002_03429	0.46	+0.7
3,832,151	-		MIT1002_03429	0.46	+0.2
3,832,151	-		MIT1002_03429	0.46	-1.0
3,832,151	-		MIT1002_03429	0.46	+0.9
3,832,151	-		MIT1002_03429	0.46	+1.5
3,832,151	-		MIT1002_03429	0.46	-0.3
3,832,151	-		MIT1002_03429	0.46	-0.1
3,832,151	-		MIT1002_03429	0.46	+2.4
3,832,151	-		MIT1002_03429	0.46	-1.5
3,832,151	-		MIT1002_03429	0.46	+1.3
3,832,151	-		MIT1002_03429	0.46	-3.5
3,832,151	-		MIT1002_03429	0.46	-0.1
3,832,151	-		MIT1002_03429	0.46	+1.2
3,832,151	-		MIT1002_03429	0.46	+0.4
3,832,151	-		MIT1002_03429	0.46	-0.4
3,832,151	-		MIT1002_03429	0.46	+0.1
3,832,151	-		MIT1002_03429	0.46	+0.0
3,832,151	-		MIT1002_03429	0.46	+0.2
3,832,151	-		MIT1002_03429	0.46	-1.6
3,832,151	-		MIT1002_03429	0.46	+0.4
3,832,151	-		MIT1002_03429	0.46	+0.0
3,832,153	+		MIT1002_03429	0.46	-0.7
3,832,153	+		MIT1002_03429	0.46	-0.7
3,832,153	+		MIT1002_03429	0.46	+0.7
3,832,153	+		MIT1002_03429	0.46	-2.8
3,832,161	-		MIT1002_03429	0.47	-1.6
3,832,161	-		MIT1002_03429	0.47	+0.2
3,832,161	-		MIT1002_03429	0.47	+2.5
3,832,161	-		MIT1002_03429	0.47	-0.2
3,832,172	+		MIT1002_03429	0.49	-0.5
3,832,184	+		MIT1002_03429	0.52	+3.2
3,832,192	-		MIT1002_03429	0.53	-1.8
3,832,194	-		MIT1002_03429	0.53	+2.3
3,832,267	+		MIT1002_03429	0.67	+0.6
3,832,278	+		MIT1002_03429	0.69	+2.7
3,832,286	-		MIT1002_03429	0.70	-0.7
3,832,286	-		MIT1002_03429	0.70	+2.1
3,832,286	-		MIT1002_03429	0.70	-0.4
3,832,320	-		MIT1002_03429	0.77	+0.0
3,832,374	+		MIT1002_03429	0.86	+1.5
3,832,413	-				+0.6
3,832,422	+				+0.3
3,832,422	+				-0.3
3,832,430	-				+0.7
3,832,486	+				-0.2
3,832,585	+				+0.9
3,832,701	-		MIT1002_03430	0.14	-3.4
3,832,715	+		MIT1002_03430	0.15	+0.3
3,832,723	-		MIT1002_03430	0.16	+0.9
3,832,780	-		MIT1002_03430	0.21	-2.0
3,832,861	+		MIT1002_03430	0.28	+0.4
3,832,871	+		MIT1002_03430	0.29	-0.6
3,832,929	+		MIT1002_03430	0.34	-2.7
3,832,929	+		MIT1002_03430	0.34	+1.2
3,832,974	-		MIT1002_03430	0.38	+2.7
3,833,015	-		MIT1002_03430	0.42	-1.1
3,833,048	+		MIT1002_03430	0.44	-3.4
3,833,075	-		MIT1002_03430	0.47	+0.0
3,833,115	+		MIT1002_03430	0.50	-0.1
3,833,201	-		MIT1002_03430	0.58	+1.2
3,833,232	+		MIT1002_03430	0.61	-2.9
3,833,253	-		MIT1002_03430	0.63	-3.7
3,833,395	+		MIT1002_03430	0.75	-1.3
3,833,437	+		MIT1002_03430	0.79	-3.4
3,833,447	-		MIT1002_03430	0.80	-1.1
3,833,499	+		MIT1002_03430	0.85	+0.3
3,833,514	-		MIT1002_03430	0.86	-3.1
3,833,575	+				-3.7
3,833,575	+				+2.7
3,833,575	+				-1.0
3,833,591	-				-1.0
3,833,591	-				-0.7
3,833,643	+				+2.1
3,833,643	+				+0.7
3,833,646	-				-0.8
3,833,646	-				+1.3
3,833,646	-				+0.8
3,833,651	-				+0.6
3,833,651	-				-3.1
3,833,694	+				-1.8
3,833,746	+				+0.4
3,833,770	+				-0.1
3,833,770	+				+0.8
3,833,798	-				+0.3
3,833,813	-				+0.2
3,833,834	-				-2.4
3,834,110	+				+0.1
3,834,126	+				-0.5
3,834,135	+		MIT1002_03431	0.10	-0.2
3,834,143	-		MIT1002_03431	0.11	-0.1
3,834,205	-		MIT1002_03431	0.14	-0.6
3,834,245	-		MIT1002_03431	0.16	+0.4
3,834,249	+		MIT1002_03431	0.16	+0.1
3,834,295	-		MIT1002_03431	0.19	+2.0
3,834,333	+		MIT1002_03431	0.21	+1.5
3,834,403	+		MIT1002_03431	0.25	+0.4
3,834,455	+		MIT1002_03431	0.27	+0.6
3,834,455	+		MIT1002_03431	0.27	-2.0
3,834,455	+		MIT1002_03431	0.27	+1.9
3,834,463	-		MIT1002_03431	0.28	+1.7
3,834,463	-		MIT1002_03431	0.28	-2.3
3,834,463	-		MIT1002_03431	0.28	+1.0
3,834,463	-		MIT1002_03431	0.28	+0.2
3,834,463	-		MIT1002_03431	0.28	+0.7
3,834,463	-		MIT1002_03431	0.28	-2.6
3,834,463	-		MIT1002_03431	0.28	+0.9
3,834,477	+		MIT1002_03431	0.29	-0.2
3,834,485	-		MIT1002_03431	0.29	-1.3
3,834,507	+		MIT1002_03431	0.30	+1.2
3,834,510	-		MIT1002_03431	0.30	+1.1
3,834,512	+		MIT1002_03431	0.31	-2.5
3,834,512	+		MIT1002_03431	0.31	-2.8
3,834,515	-		MIT1002_03431	0.31	-0.4
3,834,517	+		MIT1002_03431	0.31	-2.7
3,834,525	-		MIT1002_03431	0.31	-0.0
3,834,533	-		MIT1002_03431	0.32	+1.7
3,834,594	+		MIT1002_03431	0.35	-3.0
3,834,594	+		MIT1002_03431	0.35	+1.1
3,834,602	-		MIT1002_03431	0.35	-1.1
3,834,604	+		MIT1002_03431	0.35	+1.4
3,834,604	+		MIT1002_03431	0.35	-0.4
3,834,624	-		MIT1002_03431	0.37	+1.3