Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03301

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
3,681,909	+				-1.1
3,681,909	+				-0.5
3,681,909	+				-0.8
3,681,909	+				+0.5
3,681,909	+				+0.5
3,681,917	-				+0.8
3,682,021	+				-2.7
3,682,021	+				-2.7
3,682,214	+		MIT1002_03300	0.26	-3.7
3,682,227	+		MIT1002_03300	0.27	-0.5
3,682,236	+		MIT1002_03300	0.28	-1.9
3,682,236	+		MIT1002_03300	0.28	-0.8
3,682,262	+		MIT1002_03300	0.32	-1.8
3,682,265	-		MIT1002_03300	0.32	-1.4
3,682,275	+		MIT1002_03300	0.33	-1.3
3,682,345	+		MIT1002_03300	0.42	-2.1
3,682,350	+		MIT1002_03300	0.43	-3.2
3,682,355	-		MIT1002_03300	0.44	-5.2
3,682,358	-		MIT1002_03300	0.44	-1.5
3,682,395	+		MIT1002_03300	0.49	-3.2
3,682,404	-		MIT1002_03300	0.50	-1.7
3,682,407	+		MIT1002_03300	0.50	+0.6
3,682,420	+		MIT1002_03300	0.52	-1.2
3,682,445	+		MIT1002_03300	0.55	-4.5
3,682,453	-		MIT1002_03300	0.56	-2.0
3,682,534	-		MIT1002_03300	0.66	-1.9
3,682,616	-		MIT1002_03300	0.77	-3.8
3,682,693	+		MIT1002_03300	0.87	-3.2
3,682,738	+				-4.1
3,682,746	-				-1.8
3,682,798	+				-1.8
3,682,798	+				-2.3
3,682,806	-				-2.9
3,682,806	-				-0.4
3,682,806	-				-4.2
3,682,807	-				-0.5
3,682,918	+				+2.0
3,683,024	-		MIT1002_03301	0.10	-3.0
3,683,073	-		MIT1002_03301	0.14	-0.1
3,683,086	+		MIT1002_03301	0.15	-0.3
3,683,187	-		MIT1002_03301	0.22	+1.5
3,683,221	+		MIT1002_03301	0.24	-0.4
3,683,221	+		MIT1002_03301	0.24	+1.9
3,683,229	-		MIT1002_03301	0.25	-0.7
3,683,273	+		MIT1002_03301	0.28	-0.4
3,683,359	+		MIT1002_03301	0.34	-0.1
3,683,359	+		MIT1002_03301	0.34	-2.5
3,683,359	+		MIT1002_03301	0.34	-2.1
3,683,367	-		MIT1002_03301	0.35	+0.2
3,683,461	+		MIT1002_03301	0.42	+1.5
3,683,461	+		MIT1002_03301	0.42	+0.8
3,683,469	-		MIT1002_03301	0.42	+1.0
3,683,540	+		MIT1002_03301	0.47	+1.1
3,683,577	-		MIT1002_03301	0.50	-0.2
3,683,579	-		MIT1002_03301	0.50	-1.8
3,683,583	+		MIT1002_03301	0.50	+0.8
3,683,591	-		MIT1002_03301	0.51	+0.8
3,683,591	-		MIT1002_03301	0.51	+0.1
3,683,647	+		MIT1002_03301	0.55	+1.0
3,683,710	+		MIT1002_03301	0.59	-1.9
3,683,730	-		MIT1002_03301	0.61	+0.2
3,683,751	+		MIT1002_03301	0.62	-0.8
3,683,756	+		MIT1002_03301	0.63	-0.9
3,683,761	-		MIT1002_03301	0.63	+0.5
3,683,768	+		MIT1002_03301	0.64	-0.5
3,683,770	+		MIT1002_03301	0.64	-1.2
3,683,800	-		MIT1002_03301	0.66	-2.9
3,683,817	+		MIT1002_03301	0.67	+0.2
3,683,888	+		MIT1002_03301	0.72	-3.4
3,683,888	+		MIT1002_03301	0.72	-0.9
3,683,888	+		MIT1002_03301	0.72	-0.7
3,683,896	-		MIT1002_03301	0.73	+1.3
3,683,896	-		MIT1002_03301	0.73	+0.5
3,683,911	+		MIT1002_03301	0.74	-0.1
3,683,967	+		MIT1002_03301	0.78	-2.2
3,683,967	+		MIT1002_03301	0.78	-1.5
3,683,975	-		MIT1002_03301	0.79	-2.3
3,683,975	-		MIT1002_03301	0.79	+1.2
3,684,024	-		MIT1002_03301	0.82	-1.3
3,684,058	-		MIT1002_03301	0.85	+0.5
3,684,088	-		MIT1002_03301	0.87	+1.2
3,684,125	+		MIT1002_03301	0.89	-2.7
3,684,125	+		MIT1002_03301	0.89	-0.2
3,684,125	+		MIT1002_03301	0.89	+1.3
3,684,153	-				+0.6
3,684,355	+				+0.2
3,684,355	+				+1.4
3,684,374	-				+1.3
3,684,421	+		MIT1002_03302	0.11	+1.8
3,684,421	+		MIT1002_03302	0.11	+0.2
3,684,423	+		MIT1002_03302	0.11	+1.1
3,684,423	+		MIT1002_03302	0.11	-1.8
3,684,423	+		MIT1002_03302	0.11	+0.8
3,684,423	+		MIT1002_03302	0.11	+0.4
3,684,429	-		MIT1002_03302	0.12	+0.9
3,684,431	-		MIT1002_03302	0.12	-2.2
3,684,431	-		MIT1002_03302	0.12	-2.2
3,684,647	-		MIT1002_03302	0.35	+0.5
3,684,712	-		MIT1002_03302	0.42	-0.4
3,684,748	+		MIT1002_03302	0.46	+1.1
3,684,766	-		MIT1002_03302	0.48	-0.8
3,684,791	+		MIT1002_03302	0.50	+0.7
3,684,797	+		MIT1002_03302	0.51	-0.1
3,684,799	-		MIT1002_03302	0.51	+0.3
3,684,807	+		MIT1002_03302	0.52	+0.8
3,684,858	+		MIT1002_03302	0.58	-0.2
3,684,858	+		MIT1002_03302	0.58	+0.2
3,684,860	-		MIT1002_03302	0.58	-0.8
3,684,860	-		MIT1002_03302	0.58	+0.5
3,684,867	-		MIT1002_03302	0.58	-0.0
3,684,887	+		MIT1002_03302	0.61	+0.0
3,684,897	+		MIT1002_03302	0.62	-2.3
3,684,931	+		MIT1002_03302	0.65	-1.8
3,685,162	+		MIT1002_03302	0.90	-0.3
3,685,168	+				+1.0
3,685,183	-				+2.3
3,685,208	+				-1.3
3,685,208	+				-0.8
3,685,208	+				-1.8
3,685,208	+				+2.3
3,685,214	-				-0.1
3,685,223	+				-0.4
3,685,231	-				+2.0