Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03285

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
3,658,915	+		MIT1002_03283	0.83	-2.7
3,658,941	+		MIT1002_03283	0.87	-0.1
3,659,077	+				-3.2
3,659,095	+				+0.3
3,659,104	+				-0.3
3,659,104	-				+0.5
3,659,112	-				+0.4
3,659,131	+		MIT1002_03284	0.12	-0.7
3,659,219	+		MIT1002_03284	0.23	-1.1
3,659,288	+		MIT1002_03284	0.32	-0.8
3,659,288	+		MIT1002_03284	0.32	-3.7
3,659,296	-		MIT1002_03284	0.33	+0.2
3,659,331	+		MIT1002_03284	0.38	-4.8
3,659,383	+		MIT1002_03284	0.44	+0.7
3,659,388	+		MIT1002_03284	0.45	-1.2
3,659,388	+		MIT1002_03284	0.45	-1.6
3,659,391	-		MIT1002_03284	0.45	-1.0
3,659,441	-		MIT1002_03284	0.52	-5.1
3,659,465	-		MIT1002_03284	0.55	-2.1
3,659,609	-		MIT1002_03284	0.73	+0.2
3,659,609	-		MIT1002_03284	0.73	+0.4
3,659,642	-		MIT1002_03284	0.77	-4.1
3,659,668	+		MIT1002_03284	0.81	-0.6
3,659,740	+				-0.3
3,659,939	-				-1.1
3,659,949	+				-0.2
3,660,020	+		MIT1002_03285	0.11	-2.4
3,660,020	+		MIT1002_03285	0.11	-0.5
3,660,020	+		MIT1002_03285	0.11	-0.4
3,660,028	-		MIT1002_03285	0.11	-0.5
3,660,028	-		MIT1002_03285	0.11	-2.8
3,660,028	-		MIT1002_03285	0.11	+0.8
3,660,028	-		MIT1002_03285	0.11	-0.1
3,660,055	+		MIT1002_03285	0.13	-1.2
3,660,100	+		MIT1002_03285	0.15	-0.0
3,660,114	+		MIT1002_03285	0.16	-2.1
3,660,114	+		MIT1002_03285	0.16	+1.2
3,660,122	-		MIT1002_03285	0.17	-1.0
3,660,122	-		MIT1002_03285	0.17	-0.4
3,660,155	+		MIT1002_03285	0.18	-0.4
3,660,171	-		MIT1002_03285	0.19	-0.8
3,660,202	-		MIT1002_03285	0.21	-0.1
3,660,212	-		MIT1002_03285	0.21	+1.6
3,660,223	+		MIT1002_03285	0.22	+0.9
3,660,280	-		MIT1002_03285	0.25	-2.1
3,660,303	-		MIT1002_03285	0.26	+1.1
3,660,305	+		MIT1002_03285	0.26	+0.8
3,660,305	+		MIT1002_03285	0.26	+1.2
3,660,313	-		MIT1002_03285	0.27	-0.8
3,660,313	-		MIT1002_03285	0.27	-1.6
3,660,313	-		MIT1002_03285	0.27	-1.8
3,660,313	-		MIT1002_03285	0.27	-2.8
3,660,339	+		MIT1002_03285	0.28	-0.1
3,660,426	-		MIT1002_03285	0.33	-1.6
3,660,430	-		MIT1002_03285	0.33	+0.9
3,660,444	+		MIT1002_03285	0.34	+0.0
3,660,467	-		MIT1002_03285	0.35	-1.1
3,660,489	+		MIT1002_03285	0.36	+0.3
3,660,520	+		MIT1002_03285	0.38	-0.2
3,660,552	-		MIT1002_03285	0.40	+0.1
3,660,669	-		MIT1002_03285	0.46	-1.7
3,660,703	+		MIT1002_03285	0.48	-0.9
3,660,711	-		MIT1002_03285	0.48	-0.3
3,660,752	-		MIT1002_03285	0.50	-0.6
3,660,806	+		MIT1002_03285	0.53	-0.0
3,660,853	-		MIT1002_03285	0.56	+1.6
3,660,937	+		MIT1002_03285	0.60	-0.8
3,660,945	-		MIT1002_03285	0.61	-0.6
3,660,960	+		MIT1002_03285	0.62	-1.7
3,660,969	-		MIT1002_03285	0.62	+2.5
3,660,976	+		MIT1002_03285	0.62	-3.4
3,661,016	+		MIT1002_03285	0.65	+0.1
3,661,019	-		MIT1002_03285	0.65	-2.8
3,661,024	-		MIT1002_03285	0.65	+0.8
3,661,024	-		MIT1002_03285	0.65	-2.2
3,661,024	-		MIT1002_03285	0.65	+0.8
3,661,026	+		MIT1002_03285	0.65	-0.8
3,661,055	-		MIT1002_03285	0.67	+0.4
3,661,156	+		MIT1002_03285	0.72	-1.4
3,661,181	-		MIT1002_03285	0.73	+1.3
3,661,220	+		MIT1002_03285	0.76	-0.3
3,661,267	-		MIT1002_03285	0.78	+0.0
3,661,323	-		MIT1002_03285	0.81	+0.7
3,661,323	-		MIT1002_03285	0.81	+0.1
3,661,376	-		MIT1002_03285	0.84	-1.5
3,661,413	+		MIT1002_03285	0.86	+1.4
3,661,413	+		MIT1002_03285	0.86	-0.4
3,661,413	+		MIT1002_03285	0.86	+2.3
3,661,413	+		MIT1002_03285	0.86	+0.6
3,661,447	+		MIT1002_03285	0.88	+0.4
3,661,471	+		MIT1002_03285	0.89	-2.6
3,661,479	-		MIT1002_03285	0.89	-0.1
3,661,494	-				-0.5
3,661,598	-				+1.6
3,661,617	+				-0.9
3,661,617	+				-4.7
3,661,624	+				+0.3
3,661,694	+				-1.6
3,661,791	+				+1.0
3,661,811	-				+0.6
3,661,844	+				-3.8
3,661,859	-				-2.0
3,661,991	+				-0.9
3,662,021	+		MIT1002_03286	0.11	-4.1
3,662,027	+		MIT1002_03286	0.11	+0.2
3,662,029	+		MIT1002_03286	0.12	-2.7
3,662,029	+		MIT1002_03286	0.12	-1.9
3,662,040	-		MIT1002_03286	0.13	-1.2
3,662,060	-		MIT1002_03286	0.15	+0.2
3,662,089	-		MIT1002_03286	0.18	-0.0
3,662,106	-		MIT1002_03286	0.20	-0.7
3,662,124	+		MIT1002_03286	0.22	-0.8
3,662,178	-		MIT1002_03286	0.28	+1.4
3,662,178	-		MIT1002_03286	0.28	-1.9
3,662,191	+		MIT1002_03286	0.29	-3.2
3,662,206	+		MIT1002_03286	0.31	+0.4
3,662,207	-		MIT1002_03286	0.31	-3.7
3,662,240	-		MIT1002_03286	0.34	-1.7
3,662,240	-		MIT1002_03286	0.34	-0.6
3,662,240	-		MIT1002_03286	0.34	-2.7
3,662,240	-		MIT1002_03286	0.34	-1.0
3,662,241	-		MIT1002_03286	0.35	-2.3
3,662,254	+		MIT1002_03286	0.36	-2.8
3,662,326	+		MIT1002_03286	0.44	-3.2
3,662,336	-		MIT1002_03286	0.45	-2.1
3,662,409	+		MIT1002_03286	0.53	-0.6
3,662,437	-		MIT1002_03286	0.56	-2.7
3,662,461	-		MIT1002_03286	0.58	-1.4
3,662,548	+		MIT1002_03286	0.68	-0.5
3,662,548	+		MIT1002_03286	0.68	-2.2
3,662,548	+		MIT1002_03286	0.68	+1.2
3,662,598	-		MIT1002_03286	0.73	-1.0
3,662,642	+		MIT1002_03286	0.78	-0.6