Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03228 and MIT1002_03229 are separated by 821 nucleotides MIT1002_03229 and MIT1002_03230 are separated by 94 nucleotides MIT1002_03230 and MIT1002_03231 overlap by 4 nucleotides MIT1002_03231 and MIT1002_03232 are separated by 86 nucleotides
MIT1002_03228: MIT1002_03228 - Phage integrase family protein, at 3,598,117 to 3,599,163
_03228
MIT1002_03229: MIT1002_03229 - hypothetical protein, at 3,599,985 to 3,600,383
_03229
MIT1002_03230: MIT1002_03230 - hypothetical protein, at 3,600,478 to 3,600,798
_03230
MIT1002_03231: MIT1002_03231 - Transposase, at 3,600,795 to 3,601,145
_03231
MIT1002_03232: MIT1002_03232 - Transposase, at 3,601,232 to 3,602,275
_03232
Position (kb) 3599
3600
3601 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3599.022 kb on + strand, within MIT1002_03228 at 3599.029 kb on - strand, within MIT1002_03228 at 3599.076 kb on - strand at 3599.170 kb on - strand at 3599.170 kb on - strand at 3599.249 kb on - strand at 3599.480 kb on + strand at 3599.480 kb on + strand at 3599.480 kb on + strand at 3599.488 kb on - strand at 3599.488 kb on - strand at 3599.488 kb on - strand at 3599.595 kb on + strand at 3599.624 kb on + strand at 3599.652 kb on + strand at 3599.709 kb on + strand at 3599.725 kb on + strand at 3599.823 kb on - strand at 3600.010 kb on - strand at 3600.068 kb on + strand, within MIT1002_03229 at 3600.068 kb on + strand, within MIT1002_03229 at 3600.076 kb on - strand, within MIT1002_03229 at 3600.134 kb on + strand, within MIT1002_03229 at 3600.241 kb on + strand, within MIT1002_03229 at 3600.284 kb on - strand, within MIT1002_03229 at 3600.288 kb on - strand, within MIT1002_03229 at 3600.327 kb on - strand, within MIT1002_03229 at 3600.327 kb on - strand, within MIT1002_03229 at 3600.329 kb on - strand, within MIT1002_03229 at 3600.329 kb on - strand, within MIT1002_03229 at 3600.454 kb on - strand at 3600.468 kb on - strand at 3600.502 kb on + strand at 3600.502 kb on + strand at 3600.502 kb on + strand at 3600.502 kb on + strand at 3600.510 kb on - strand, within MIT1002_03230 at 3600.659 kb on - strand, within MIT1002_03230 at 3600.681 kb on - strand, within MIT1002_03230 at 3600.698 kb on + strand, within MIT1002_03230 at 3600.821 kb on + strand at 3600.900 kb on - strand, within MIT1002_03231 at 3600.913 kb on + strand, within MIT1002_03231 at 3600.953 kb on + strand, within MIT1002_03231 at 3600.970 kb on + strand, within MIT1002_03231 at 3600.971 kb on + strand, within MIT1002_03231 at 3600.994 kb on + strand, within MIT1002_03231 at 3601.101 kb on + strand, within MIT1002_03231 at 3601.321 kb on + strand at 3601.377 kb on - strand, within MIT1002_03232
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 3,599,022 + MIT1002_03228 0.86 -4.2 3,599,029 - MIT1002_03228 0.87 +3.2 3,599,076 - -2.9 3,599,170 - -0.7 3,599,170 - -4.2 3,599,249 - +0.4 3,599,480 + -0.7 3,599,480 + -2.7 3,599,480 + -0.7 3,599,488 - +0.5 3,599,488 - -1.6 3,599,488 - -0.4 3,599,595 + +1.6 3,599,624 + -0.4 3,599,652 + -2.9 3,599,709 + +0.4 3,599,725 + +1.9 3,599,823 - -0.8 3,600,010 - -1.6 3,600,068 + MIT1002_03229 0.21 -3.4 3,600,068 + MIT1002_03229 0.21 -0.6 3,600,076 - MIT1002_03229 0.23 -3.5 3,600,134 + MIT1002_03229 0.37 +0.4 3,600,241 + MIT1002_03229 0.64 -0.1 3,600,284 - MIT1002_03229 0.75 +1.0 3,600,288 - MIT1002_03229 0.76 +0.6 3,600,327 - MIT1002_03229 0.86 +0.7 3,600,327 - MIT1002_03229 0.86 +3.4 3,600,329 - MIT1002_03229 0.86 -2.8 3,600,329 - MIT1002_03229 0.86 -2.8 3,600,454 - -0.8 3,600,468 - +0.6 3,600,502 + -3.3 3,600,502 + -0.9 3,600,502 + -1.2 3,600,502 + -0.8 3,600,510 - MIT1002_03230 0.10 -0.2 3,600,659 - MIT1002_03230 0.56 -0.7 3,600,681 - MIT1002_03230 0.63 +0.2 3,600,698 + MIT1002_03230 0.69 +3.2 3,600,821 + -0.6 3,600,900 - MIT1002_03231 0.30 -1.5 3,600,913 + MIT1002_03231 0.34 -1.0 3,600,953 + MIT1002_03231 0.45 +1.3 3,600,970 + MIT1002_03231 0.50 +0.5 3,600,971 + MIT1002_03231 0.50 +0.1 3,600,994 + MIT1002_03231 0.57 +2.0 3,601,101 + MIT1002_03231 0.87 +1.5 3,601,321 + +0.6 3,601,377 - MIT1002_03232 0.14 +0.8
Or see this region's nucleotide sequence