Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03054

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
3,408,510	+				-1.4
3,408,518	-				-0.1
3,408,520	+				-0.2
3,408,683	-				-1.8
3,408,691	+				-0.8
3,408,715	+				+0.1
3,408,794	+				+2.1
3,408,817	-				-0.4
3,408,828	+				-1.5
3,408,828	+				-4.0
3,408,828	+				+1.6
3,408,836	-				-1.2
3,408,839	-				-2.6
3,408,967	+				+0.0
3,408,972	-				-3.8
3,409,126	+				+0.1
3,409,126	-				+0.4
3,409,131	+				+0.7
3,409,155	-				+0.9
3,409,239	+				-0.7
3,409,280	+				+1.6
3,409,291	-				-1.3
3,409,324	+				+2.9
3,409,422	+				-1.6
3,409,430	-		MIT1002_03054	0.11	+2.3
3,409,430	-		MIT1002_03054	0.11	-1.0
3,409,475	-		MIT1002_03054	0.17	-1.2
3,409,596	+		MIT1002_03054	0.34	-0.2
3,409,596	+		MIT1002_03054	0.34	+2.1
3,409,604	-		MIT1002_03054	0.35	-2.1
3,409,607	+		MIT1002_03054	0.35	+0.0
3,409,615	-		MIT1002_03054	0.36	+1.0
3,409,784	+		MIT1002_03054	0.60	+1.0
3,409,813	+		MIT1002_03054	0.64	-0.5
3,409,821	-		MIT1002_03054	0.65	-0.5
3,409,859	-		MIT1002_03054	0.70	+2.9
3,409,870	+		MIT1002_03054	0.71	+1.2
3,409,875	+		MIT1002_03054	0.72	-0.2
3,409,875	+		MIT1002_03054	0.72	+1.7
3,409,875	+		MIT1002_03054	0.72	+1.8
3,409,883	-		MIT1002_03054	0.73	-3.4
3,409,883	-		MIT1002_03054	0.73	+0.8
3,409,883	-		MIT1002_03054	0.73	+0.1
3,409,883	-		MIT1002_03054	0.73	+2.3
3,409,895	+		MIT1002_03054	0.75	-1.0
3,409,912	+		MIT1002_03054	0.77	+1.3
3,409,913	-		MIT1002_03054	0.77	+0.4
3,409,913	-		MIT1002_03054	0.77	-1.8
3,409,920	-		MIT1002_03054	0.78	+0.1
3,409,996	+		MIT1002_03054	0.89	-0.3
3,410,004	-		MIT1002_03054	0.90	-0.2
3,410,004	-		MIT1002_03054	0.90	-0.7
3,410,004	-		MIT1002_03054	0.90	-1.8
3,410,093	-				+0.4
3,410,093	-				-3.3
3,410,140	+				+0.4
3,410,148	-				-0.6
3,410,205	+				-1.3
3,410,238	+				-3.1
3,410,258	+				-1.4
3,410,258	+				-2.1
3,410,282	-				-1.7
3,410,322	-		MIT1002_03055	0.11	-1.8
3,410,374	-		MIT1002_03055	0.16	-2.0
3,410,374	-		MIT1002_03055	0.16	-0.2
3,410,381	-		MIT1002_03055	0.17	-0.6
3,410,455	+		MIT1002_03055	0.25	-2.7
3,410,471	-		MIT1002_03055	0.27	-0.6
3,410,700	+		MIT1002_03055	0.51	-2.5
3,410,700	+		MIT1002_03055	0.51	-3.3
3,410,700	+		MIT1002_03055	0.51	-1.4
3,410,700	+		MIT1002_03055	0.51	-0.2
3,410,700	+		MIT1002_03055	0.51	-1.0
3,410,700	+		MIT1002_03055	0.51	-1.2
3,410,700	+		MIT1002_03055	0.51	-1.6
3,410,700	+		MIT1002_03055	0.51	-3.5
3,410,700	+		MIT1002_03055	0.51	-1.0
3,410,708	-		MIT1002_03055	0.51	-2.0
3,410,708	-		MIT1002_03055	0.51	-2.4
3,410,708	-		MIT1002_03055	0.51	-1.0
3,410,708	-		MIT1002_03055	0.51	-0.6
3,410,708	-		MIT1002_03055	0.51	-2.4
3,410,708	-		MIT1002_03055	0.51	+0.2
3,410,728	+		MIT1002_03055	0.54	-1.9
3,410,819	-		MIT1002_03055	0.63	-1.7
3,410,877	+		MIT1002_03055	0.69	-1.0
3,410,887	-		MIT1002_03055	0.70	-0.6
3,410,905	-		MIT1002_03055	0.72	-2.3
3,410,912	+		MIT1002_03055	0.73	-1.4
3,410,938	+		MIT1002_03055	0.76	+3.0
3,410,978	-		MIT1002_03055	0.80	-0.8
3,411,031	+		MIT1002_03055	0.85	-2.6