Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02873

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
3,187,893	+		MIT1002_02871	0.87	+1.5
3,187,955	+				+1.0
3,188,005	+				-0.2
3,188,070	+				-0.3
3,188,156	+				-0.2
3,188,251	+				-1.0
3,188,259	-				+0.9
3,188,285	+		MIT1002_02872	0.10	+1.2
3,188,298	+		MIT1002_02872	0.12	-1.7
3,188,365	+		MIT1002_02872	0.23	+1.7
3,188,367	+		MIT1002_02872	0.23	+0.8
3,188,373	-		MIT1002_02872	0.24	+0.7
3,188,401	+		MIT1002_02872	0.29	-0.6
3,188,411	+		MIT1002_02872	0.30	+1.3
3,188,444	+		MIT1002_02872	0.35	-0.4
3,188,452	-		MIT1002_02872	0.37	+0.3
3,188,488	+		MIT1002_02872	0.42	+0.0
3,188,488	+		MIT1002_02872	0.42	-0.4
3,188,556	-		MIT1002_02872	0.53	+0.8
3,188,568	-		MIT1002_02872	0.55	+0.0
3,188,597	-		MIT1002_02872	0.60	+0.5
3,188,614	+		MIT1002_02872	0.62	-0.7
3,188,637	-		MIT1002_02872	0.66	+0.7
3,188,661	+		MIT1002_02872	0.70	+0.2
3,188,818	+				-0.2
3,188,914	+				-1.4
3,188,976	+				-2.0
3,189,016	+				-0.2
3,189,034	+				+0.8
3,189,034	+				-0.7
3,189,042	-		MIT1002_02873	0.10	+1.7
3,189,147	+		MIT1002_02873	0.17	+1.5
3,189,162	-		MIT1002_02873	0.18	-1.2
3,189,169	+		MIT1002_02873	0.18	-0.3
3,189,178	+		MIT1002_02873	0.19	-0.2
3,189,218	-		MIT1002_02873	0.21	+1.8
3,189,309	-		MIT1002_02873	0.27	-1.4
3,189,456	-		MIT1002_02873	0.36	+1.8
3,189,490	-		MIT1002_02873	0.39	+2.3
3,189,492	+		MIT1002_02873	0.39	+2.0
3,189,512	+		MIT1002_02873	0.40	+0.6
3,189,547	-		MIT1002_02873	0.42	-1.0
3,189,590	-		MIT1002_02873	0.45	-1.2
3,189,629	+		MIT1002_02873	0.47	-0.2
3,189,629	+		MIT1002_02873	0.47	+0.3
3,189,629	+		MIT1002_02873	0.47	-0.2
3,189,637	-		MIT1002_02873	0.48	+0.1
3,189,637	-		MIT1002_02873	0.48	+0.7
3,189,658	+		MIT1002_02873	0.49	-0.2
3,189,713	+		MIT1002_02873	0.53	-2.8
3,189,721	-		MIT1002_02873	0.53	-1.2
3,189,748	-		MIT1002_02873	0.55	-1.4
3,189,774	-		MIT1002_02873	0.57	+1.4
3,189,774	-		MIT1002_02873	0.57	+0.7
3,189,776	+		MIT1002_02873	0.57	+1.3
3,189,776	+		MIT1002_02873	0.57	+0.6
3,189,776	+		MIT1002_02873	0.57	-1.4
3,189,776	+		MIT1002_02873	0.57	+0.4
3,189,776	+		MIT1002_02873	0.57	-2.6
3,189,776	+		MIT1002_02873	0.57	-0.8
3,189,776	+		MIT1002_02873	0.57	+2.0
3,189,776	+		MIT1002_02873	0.57	+1.1
3,189,776	+		MIT1002_02873	0.57	-2.6
3,189,776	+		MIT1002_02873	0.57	-0.6
3,189,776	+		MIT1002_02873	0.57	-0.0
3,189,784	-		MIT1002_02873	0.57	+0.9
3,189,784	-		MIT1002_02873	0.57	-2.3
3,189,784	-		MIT1002_02873	0.57	-1.8
3,189,784	-		MIT1002_02873	0.57	+1.0
3,189,784	-		MIT1002_02873	0.57	+0.1
3,189,784	-		MIT1002_02873	0.57	-3.1
3,189,784	-		MIT1002_02873	0.57	+3.8
3,189,784	-		MIT1002_02873	0.57	-2.6
3,189,784	-		MIT1002_02873	0.57	-0.0
3,189,784	-		MIT1002_02873	0.57	-3.1
3,189,914	+		MIT1002_02873	0.66	+2.0
3,189,922	-		MIT1002_02873	0.66	-0.3
3,189,922	-		MIT1002_02873	0.66	+0.5
3,189,951	+		MIT1002_02873	0.68	-1.9
3,190,011	+		MIT1002_02873	0.72	-0.2
3,190,019	+		MIT1002_02873	0.72	-0.1
3,190,197	-		MIT1002_02873	0.84	+0.6
3,190,209	-		MIT1002_02873	0.84	-0.4
3,190,254	-		MIT1002_02873	0.87	-0.1
3,190,264	-		MIT1002_02873	0.88	-2.8
3,190,286	+		MIT1002_02873	0.89	+0.2
3,190,300	+				+0.3
3,190,309	-				-0.3
3,190,309	-				-0.5
3,190,309	-				-1.4
3,190,311	+				+0.8
3,190,514	-				-0.3
3,190,566	-		MIT1002_02874	0.12	+0.4
3,190,804	+		MIT1002_02874	0.37	-0.5
3,190,830	-		MIT1002_02874	0.40	-1.2
3,190,852	-		MIT1002_02874	0.42	+0.4
3,190,902	-		MIT1002_02874	0.47	-1.2
3,190,904	+		MIT1002_02874	0.48	-0.9
3,190,950	+		MIT1002_02874	0.52	+0.3
3,190,950	+		MIT1002_02874	0.52	-0.8
3,190,958	-		MIT1002_02874	0.53	-1.1
3,190,974	-		MIT1002_02874	0.55	-2.1
3,191,035	+		MIT1002_02874	0.61	-2.8
3,191,128	-		MIT1002_02874	0.71	-3.1
3,191,201	+		MIT1002_02874	0.79	+0.9
3,191,206	+		MIT1002_02874	0.79	-2.2
3,191,253	-		MIT1002_02874	0.84	+1.3
3,191,258	-		MIT1002_02874	0.85	+1.6
3,191,330	+				+0.5
3,191,335	+				-1.2
3,191,338	-				-2.8
3,191,343	-				-0.3
3,191,343	-				+0.3
3,191,348	-				-1.4
3,191,395	+				-0.4
3,191,395	+				-0.1
3,191,403	-				-1.8
3,191,408	+				-1.2