Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02417

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
2,698,324	-		MIT1002_02415	0.86	-0.5
2,698,375	+				+1.6
2,698,380	+				+0.5
2,698,380	+				-1.0
2,698,383	-				+0.7
2,698,383	-				-1.9
2,698,388	-				-1.6
2,698,388	-				+1.3
2,698,388	-				-0.6
2,698,403	+				+0.4
2,698,404	+				+1.3
2,698,420	+				-0.7
2,698,420	+				-2.5
2,698,454	-				-2.2
2,698,461	+				-1.5
2,698,461	+				+0.8
2,698,484	+				-0.1
2,698,484	+				-1.6
2,698,492	-				+2.9
2,698,492	-				+0.8
2,698,494	+				-1.4
2,698,500	-				-1.5
2,698,502	-				-2.6
2,698,510	-				-0.5
2,698,588	+		MIT1002_02416	0.20	+0.3
2,698,588	+		MIT1002_02416	0.20	-2.6
2,698,596	-		MIT1002_02416	0.22	-3.4
2,698,627	+		MIT1002_02416	0.27	-0.2
2,698,627	+		MIT1002_02416	0.27	+2.3
2,698,627	+		MIT1002_02416	0.27	-2.2
2,698,635	-		MIT1002_02416	0.29	-0.5
2,698,636	+		MIT1002_02416	0.29	+0.7
2,698,682	+		MIT1002_02416	0.37	-0.5
2,698,682	+		MIT1002_02416	0.37	-0.7
2,698,690	-		MIT1002_02416	0.39	-1.6
2,698,690	-		MIT1002_02416	0.39	+0.9
2,698,692	+		MIT1002_02416	0.39	-2.1
2,698,692	+		MIT1002_02416	0.39	+0.5
2,698,692	+		MIT1002_02416	0.39	-1.4
2,698,695	-		MIT1002_02416	0.40	+1.6
2,698,762	+		MIT1002_02416	0.52	-0.6
2,698,782	+		MIT1002_02416	0.56	-3.4
2,698,782	+		MIT1002_02416	0.56	-1.6
2,698,787	+		MIT1002_02416	0.56	+2.2
2,698,787	+		MIT1002_02416	0.56	-2.4
2,698,797	+		MIT1002_02416	0.58	-1.0
2,698,844	-		MIT1002_02416	0.67	-1.7
2,698,889	-		MIT1002_02416	0.75	+0.5
2,698,930	+		MIT1002_02416	0.83	+0.9
2,698,971	+				-0.3
2,698,971	+				-0.6
2,698,979	-				-0.7
2,699,095	-				-0.2
2,699,108	-				-1.8
2,699,129	+				-2.9
2,699,153	+				-3.8
2,699,317	-				+1.3
2,699,347	+		MIT1002_02417	0.32	+1.4
2,699,359	+		MIT1002_02417	0.43	+0.6
2,699,569	+				-2.5
2,699,616	+				+0.8
2,699,749	+		MIT1002_02418	0.17	+0.1
2,699,802	+		MIT1002_02418	0.22	+0.8
2,699,908	+		MIT1002_02418	0.33	+0.6
2,699,911	-		MIT1002_02418	0.34	-0.3
2,699,918	+		MIT1002_02418	0.34	+0.0
2,699,926	-		MIT1002_02418	0.35	+0.7
2,699,936	-		MIT1002_02418	0.36	-0.4
2,699,948	+		MIT1002_02418	0.37	-1.7
2,699,948	+		MIT1002_02418	0.37	+0.8
2,699,948	+		MIT1002_02418	0.37	+0.9
2,699,948	+		MIT1002_02418	0.37	+1.9
2,699,948	+		MIT1002_02418	0.37	-3.3
2,699,956	-		MIT1002_02418	0.38	-2.2
2,699,956	-		MIT1002_02418	0.38	-0.3
2,699,956	-		MIT1002_02418	0.38	-0.5
2,699,957	-		MIT1002_02418	0.38	-2.8
2,700,151	+		MIT1002_02418	0.58	+1.7
2,700,159	-		MIT1002_02418	0.59	+0.3
2,700,201	+		MIT1002_02418	0.63	+3.0
2,700,201	+		MIT1002_02418	0.63	-3.1
2,700,201	+		MIT1002_02418	0.63	-0.4
2,700,208	+		MIT1002_02418	0.64	-0.0
2,700,216	-		MIT1002_02418	0.65	+0.1
2,700,322	+		MIT1002_02418	0.75	+0.2