Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02232

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
2,492,975	+				-0.0
2,493,089	+				-1.9
2,493,099	+				+0.9
2,493,099	+				+2.2
2,493,107	-				-2.2
2,493,189	-		MIT1002_02231	0.13	-2.9
2,493,195	+		MIT1002_02231	0.13	-0.4
2,493,226	+		MIT1002_02231	0.18	-3.2
2,493,258	-		MIT1002_02231	0.22	-3.1
2,493,273	-		MIT1002_02231	0.24	-1.9
2,493,273	-		MIT1002_02231	0.24	-4.0
2,493,277	+		MIT1002_02231	0.25	-3.6
2,493,341	+		MIT1002_02231	0.34	-0.5
2,493,349	-		MIT1002_02231	0.35	-0.7
2,493,349	-		MIT1002_02231	0.35	-2.6
2,493,410	+		MIT1002_02231	0.44	-4.5
2,493,413	+		MIT1002_02231	0.44	-3.5
2,493,415	+		MIT1002_02231	0.44	-1.0
2,493,420	+		MIT1002_02231	0.45	-3.5
2,493,421	-		MIT1002_02231	0.45	+0.8
2,493,423	-		MIT1002_02231	0.45	+1.0
2,493,432	+		MIT1002_02231	0.47	+0.7
2,493,468	+		MIT1002_02231	0.52	-2.7
2,493,478	-		MIT1002_02231	0.53	-4.0
2,493,609	+		MIT1002_02231	0.71	-1.2
2,493,641	+		MIT1002_02231	0.76	-2.2
2,493,649	+		MIT1002_02231	0.77	-1.0
2,493,649	+		MIT1002_02231	0.77	-2.5
2,493,649	+		MIT1002_02231	0.77	-3.9
2,493,649	+		MIT1002_02231	0.77	+1.6
2,493,655	-		MIT1002_02231	0.78	-0.2
2,493,657	-		MIT1002_02231	0.78	-1.0
2,493,657	-		MIT1002_02231	0.78	-0.7
2,493,657	-		MIT1002_02231	0.78	-2.3
2,493,717	-		MIT1002_02231	0.87	-0.7
2,493,726	+		MIT1002_02231	0.88	-4.0
2,493,746	-				-2.6
2,493,981	+				-3.7
2,493,993	+				-0.4
2,493,993	+				-2.3
2,493,993	+				-0.7
2,494,001	-				-0.8
2,494,103	+		MIT1002_02232	0.13	-2.6
2,494,198	+		MIT1002_02232	0.20	-1.2
2,494,389	-		MIT1002_02232	0.36	-1.0
2,494,417	+		MIT1002_02232	0.38	-1.7
2,494,501	+		MIT1002_02232	0.45	+0.9
2,494,509	-		MIT1002_02232	0.46	-1.5
2,494,566	+		MIT1002_02232	0.51	-1.6
2,494,566	+		MIT1002_02232	0.51	-1.9
2,494,574	-		MIT1002_02232	0.51	-0.7
2,494,574	-		MIT1002_02232	0.51	-1.4
2,494,574	-		MIT1002_02232	0.51	-1.8
2,494,626	-		MIT1002_02232	0.56	-4.0
2,494,705	-		MIT1002_02232	0.62	+1.3
2,494,792	-		MIT1002_02232	0.69	-1.4
2,494,845	+		MIT1002_02232	0.74	-2.9
2,494,911	+		MIT1002_02232	0.79	+0.7
2,494,917	-		MIT1002_02232	0.80	-0.2
2,494,940	+		MIT1002_02232	0.81	+1.4
2,495,053	+				-2.4
2,495,061	+				-1.7
2,495,061	-				-0.8
2,495,097	-				+0.9
2,495,097	-				+1.8
2,495,103	+				+0.7
2,495,198	-				+0.8
2,495,245	+				+0.3
2,495,258	+				-1.6
2,495,378	-				+0.0
2,495,380	+				+1.4
2,495,380	+				-1.7
2,495,422	-		MIT1002_02233	0.11	-3.8
2,495,450	-		MIT1002_02233	0.13	-3.8
2,495,452	+		MIT1002_02233	0.14	-0.2
2,495,455	-		MIT1002_02233	0.14	+1.8
2,495,457	+		MIT1002_02233	0.14	-0.3
2,495,459	+		MIT1002_02233	0.14	+0.6
2,495,459	+		MIT1002_02233	0.14	-0.7
2,495,459	+		MIT1002_02233	0.14	+0.1
2,495,459	+		MIT1002_02233	0.14	-3.8
2,495,460	-		MIT1002_02233	0.14	-2.9
2,495,467	-		MIT1002_02233	0.15	+1.7
2,495,467	-		MIT1002_02233	0.15	+1.9
2,495,467	-		MIT1002_02233	0.15	+0.3
2,495,494	-		MIT1002_02233	0.17	+0.2
2,495,603	+		MIT1002_02233	0.25	-3.0
2,495,662	-		MIT1002_02233	0.29	-0.4
2,495,687	+		MIT1002_02233	0.31	-0.5
2,495,690	-		MIT1002_02233	0.31	-0.4
2,495,725	+		MIT1002_02233	0.33	+0.8
2,495,761	+		MIT1002_02233	0.36	-2.2
2,495,763	+		MIT1002_02233	0.36	-2.0
2,495,768	+		MIT1002_02233	0.37	-3.2
2,495,818	-		MIT1002_02233	0.40	+1.0
2,495,818	-		MIT1002_02233	0.40	+0.4
2,495,827	+		MIT1002_02233	0.41	-3.6
2,495,827	+		MIT1002_02233	0.41	-2.0
2,495,969	+		MIT1002_02233	0.51	-1.2
2,496,041	-		MIT1002_02233	0.56	-1.1
2,496,077	+		MIT1002_02233	0.59	-1.1
2,496,097	+		MIT1002_02233	0.60	+0.2