Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01988

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
2,222,697	+				-1.7
2,222,697	+				+0.1
2,222,705	-				+0.5
2,222,865	-				-2.6
2,222,963	-				-2.9
2,222,966	-		MIT1002_01987	0.10	+0.7
2,223,000	+		MIT1002_01987	0.15	-3.6
2,223,082	+		MIT1002_01987	0.27	+0.9
2,223,082	+		MIT1002_01987	0.27	+1.2
2,223,135	+		MIT1002_01987	0.35	+1.2
2,223,135	+		MIT1002_01987	0.35	-1.0
2,223,137	+		MIT1002_01987	0.35	-1.2
2,223,138	-		MIT1002_01987	0.36	-0.7
2,223,141	-		MIT1002_01987	0.36	+1.5
2,223,153	+		MIT1002_01987	0.38	+0.2
2,223,156	-		MIT1002_01987	0.38	+1.9
2,223,167	-		MIT1002_01987	0.40	-0.4
2,223,207	+		MIT1002_01987	0.46	-0.1
2,223,216	+		MIT1002_01987	0.47	+1.0
2,223,252	-		MIT1002_01987	0.52	-2.2
2,223,252	-		MIT1002_01987	0.52	+0.4
2,223,252	-		MIT1002_01987	0.52	-1.5
2,223,267	-		MIT1002_01987	0.54	+0.3
2,223,370	-		MIT1002_01987	0.69	-0.6
2,223,431	-		MIT1002_01987	0.78	+1.2
2,223,485	+		MIT1002_01987	0.86	-0.6
2,223,493	-		MIT1002_01987	0.87	+0.0
2,223,516	+				+1.5
2,223,680	-				+0.1
2,223,680	-				+0.2
2,223,680	-				+2.9
2,223,686	+		MIT1002_01988	0.10	-2.8
2,223,710	+		MIT1002_01988	0.15	-0.5
2,223,720	-		MIT1002_01988	0.18	-0.4
2,223,875	-		MIT1002_01988	0.51	+1.6
2,223,890	-		MIT1002_01988	0.54	+0.3
2,223,903	+		MIT1002_01988	0.57	+0.2
2,223,910	+		MIT1002_01988	0.59	-0.6
2,223,910	+		MIT1002_01988	0.59	-2.5
2,223,910	+		MIT1002_01988	0.59	+0.8
2,223,918	-		MIT1002_01988	0.60	-2.5
2,224,048	+		MIT1002_01988	0.89	+1.5
2,224,053	+		MIT1002_01988	0.90	-2.1
2,224,053	+		MIT1002_01988	0.90	-2.8
2,224,053	+		MIT1002_01988	0.90	+1.3
2,224,055	-				+1.3
2,224,055	-				+0.3
2,224,061	-				+0.2
2,224,065	-				-1.4
2,224,091	+				-0.4
2,224,195	-				+1.2
2,224,276	+				+1.1
2,224,296	+				+0.4
2,224,296	+				-0.6
2,224,297	-				+1.0
2,224,299	+				+1.7
2,224,306	+				-1.9
2,224,306	+				+1.5
2,224,306	+				+0.1
2,224,314	-				-2.5
2,224,314	-				-0.3
2,224,318	-				-0.4
2,224,501	+		MIT1002_01989	0.24	+2.8
2,224,517	-		MIT1002_01989	0.25	-0.2
2,224,522	-		MIT1002_01989	0.26	-0.7
2,224,522	-		MIT1002_01989	0.26	-2.0
2,224,522	-		MIT1002_01989	0.26	+1.0
2,224,575	+		MIT1002_01989	0.30	-0.3
2,224,636	-		MIT1002_01989	0.36	+0.9
2,224,636	-		MIT1002_01989	0.36	-0.8
2,224,636	-		MIT1002_01989	0.36	+0.1
2,224,636	-		MIT1002_01989	0.36	-0.5
2,224,636	-		MIT1002_01989	0.36	-1.2
2,224,638	+		MIT1002_01989	0.36	-0.0
2,224,646	-		MIT1002_01989	0.37	+0.1
2,224,646	-		MIT1002_01989	0.37	+0.2
2,224,646	-		MIT1002_01989	0.37	+0.0
2,224,700	+		MIT1002_01989	0.42	-3.3
2,224,700	+		MIT1002_01989	0.42	+1.1
2,224,701	-		MIT1002_01989	0.42	+0.7
2,224,708	-		MIT1002_01989	0.43	-0.3
2,224,775	+		MIT1002_01989	0.49	-2.2
2,224,775	+		MIT1002_01989	0.49	-0.1
2,224,817	-		MIT1002_01989	0.53	+1.4
2,224,822	-		MIT1002_01989	0.53	+0.1
2,224,915	+		MIT1002_01989	0.62	-2.3
2,224,927	+		MIT1002_01989	0.63	+1.1
2,224,960	+		MIT1002_01989	0.66	-1.6
2,224,976	-		MIT1002_01989	0.68	-0.7
2,225,002	+		MIT1002_01989	0.70	-1.1
2,225,052	-		MIT1002_01989	0.75	+1.5