Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01846

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01845 and MIT1002_01846 overlap by 8 nucleotidesMIT1002_01846 and MIT1002_01847 are separated by 0 nucleotidesMIT1002_01847 and MIT1002_01848 are separated by 101 nucleotides MIT1002_01845: MIT1002_01845 - Lipoyl synthase, at 2,055,142 to 2,056,104 _01845 MIT1002_01846: MIT1002_01846 - Octanoyltransferase, at 2,056,097 to 2,056,768 _01846 MIT1002_01847: MIT1002_01847 - hypothetical protein, at 2,056,769 to 2,057,032 _01847 MIT1002_01848: MIT1002_01848 - D-alanyl-D-alanine carboxypeptidase DacC precursor, at 2,057,134 to 2,058,318 _01848 Position (kb) 2056 2057Strain fitness (log2 ratio) -1 0 1 2at 2055.116 kb on + strandat 2055.116 kb on + strandat 2055.117 kb on - strandat 2055.117 kb on - strandat 2055.124 kb on - strandat 2055.124 kb on - strandat 2055.124 kb on - strandat 2057.125 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
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2,055,116 + +0.5
2,055,116 + +0.5
2,055,117 - -0.5
2,055,117 - +2.1
2,055,124 - -0.9
2,055,124 - +0.8
2,055,124 - +0.5
2,057,125 - +0.9

Or see this region's nucleotide sequence