Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01809

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
2,012,337	+				-0.7
2,012,419	+				-3.7
2,012,610	+		MIT1002_01807	0.50	+0.8
2,013,188	-				+0.8
2,013,194	+				+1.0
2,013,202	+				+1.5
2,013,368	+		MIT1002_01809	0.18	+2.1
2,013,376	-		MIT1002_01809	0.20	-3.6
2,013,403	-		MIT1002_01809	0.26	+1.9
2,013,476	+		MIT1002_01809	0.41	+1.2
2,013,512	+		MIT1002_01809	0.49	+3.1
2,013,512	+		MIT1002_01809	0.49	+0.8
2,013,550	+		MIT1002_01809	0.57	+0.4
2,013,611	+		MIT1002_01809	0.69	-0.5
2,013,617	+		MIT1002_01809	0.71	-0.1
2,013,617	-		MIT1002_01809	0.71	+2.0
2,013,619	-		MIT1002_01809	0.71	-0.3
2,013,699	+		MIT1002_01809	0.88	-0.4
2,013,699	+		MIT1002_01809	0.88	-1.1
2,013,699	+		MIT1002_01809	0.88	-0.0
2,013,702	-		MIT1002_01809	0.88	-1.8
2,013,707	-		MIT1002_01809	0.90	-1.1
2,013,707	-		MIT1002_01809	0.90	+0.4
2,013,707	-		MIT1002_01809	0.90	+0.1
2,013,707	-		MIT1002_01809	0.90	+0.6
2,013,707	-		MIT1002_01809	0.90	+1.1
2,013,778	+				+0.8
2,013,786	-				-1.1
2,013,826	+				-1.8
2,013,888	-				-0.8
2,013,914	+				+1.3
2,013,953	-				-0.3
2,013,976	-				-1.2
2,014,009	-		MIT1002_01810	0.11	-1.5
2,014,029	+		MIT1002_01810	0.12	-2.4
2,014,088	+		MIT1002_01810	0.15	-1.8
2,014,088	+		MIT1002_01810	0.15	-2.9
2,014,088	+		MIT1002_01810	0.15	+1.0
2,014,088	+		MIT1002_01810	0.15	-2.4
2,014,088	+		MIT1002_01810	0.15	+1.3
2,014,096	-		MIT1002_01810	0.16	-0.3
2,014,119	-		MIT1002_01810	0.17	+2.0
2,014,123	+		MIT1002_01810	0.17	-0.5
2,014,129	-		MIT1002_01810	0.17	+0.8
2,014,235	-		MIT1002_01810	0.23	+1.5
2,014,266	+		MIT1002_01810	0.24	+1.2
2,014,280	+		MIT1002_01810	0.25	+0.7
2,014,280	+		MIT1002_01810	0.25	+0.0
2,014,371	-		MIT1002_01810	0.30	-0.2
2,014,373	+		MIT1002_01810	0.30	-2.1
2,014,373	+		MIT1002_01810	0.30	-2.6
2,014,373	+		MIT1002_01810	0.30	-1.3
2,014,381	-		MIT1002_01810	0.30	+0.1
2,014,381	-		MIT1002_01810	0.30	-0.8
2,014,383	+		MIT1002_01810	0.30	-0.1
2,014,383	+		MIT1002_01810	0.30	-1.6
2,014,383	+		MIT1002_01810	0.30	+1.7
2,014,391	-		MIT1002_01810	0.31	-1.2
2,014,391	-		MIT1002_01810	0.31	+0.6
2,014,417	+		MIT1002_01810	0.32	-3.6
2,014,425	-		MIT1002_01810	0.32	-0.6
2,014,537	+		MIT1002_01810	0.38	-0.9
2,014,622	+		MIT1002_01810	0.42	-0.1
2,014,634	+		MIT1002_01810	0.43	-3.3
2,014,668	-		MIT1002_01810	0.45	+1.6
2,014,673	+		MIT1002_01810	0.45	-2.9
2,014,705	-		MIT1002_01810	0.47	+0.3
2,014,705	-		MIT1002_01810	0.47	+2.9
2,014,705	-		MIT1002_01810	0.47	-3.2