Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01672

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
1,847,526	-		MIT1002_01671	0.32	-3.6
1,847,548	-		MIT1002_01671	0.34	-1.9
1,847,553	+		MIT1002_01671	0.35	+1.3
1,847,609	+		MIT1002_01671	0.40	-0.1
1,847,617	-		MIT1002_01671	0.40	+0.1
1,847,617	-		MIT1002_01671	0.40	-1.2
1,847,617	-		MIT1002_01671	0.40	+1.3
1,847,617	-		MIT1002_01671	0.40	+0.8
1,847,624	+		MIT1002_01671	0.41	+0.8
1,847,627	-		MIT1002_01671	0.41	-1.6
1,847,629	+		MIT1002_01671	0.41	+0.3
1,847,629	+		MIT1002_01671	0.41	-0.5
1,847,629	+		MIT1002_01671	0.41	+0.6
1,847,637	-		MIT1002_01671	0.42	+0.0
1,847,637	-		MIT1002_01671	0.42	-1.2
1,847,637	-		MIT1002_01671	0.42	+3.3
1,847,637	-		MIT1002_01671	0.42	-0.6
1,847,637	-		MIT1002_01671	0.42	-0.4
1,847,637	-		MIT1002_01671	0.42	+0.3
1,847,716	-		MIT1002_01671	0.49	+0.5
1,847,794	+		MIT1002_01671	0.55	+2.2
1,847,802	-		MIT1002_01671	0.56	-3.6
1,847,837	-		MIT1002_01671	0.59	-1.3
1,847,909	+		MIT1002_01671	0.65	-0.3
1,847,931	-		MIT1002_01671	0.67	-0.1
1,847,943	+		MIT1002_01671	0.68	-1.3
1,847,943	+		MIT1002_01671	0.68	+0.5
1,847,959	-		MIT1002_01671	0.69	+0.8
1,848,100	-		MIT1002_01671	0.81	+1.2
1,848,100	-		MIT1002_01671	0.81	+0.4
1,848,119	+		MIT1002_01671	0.83	+1.4
1,848,127	+		MIT1002_01671	0.84	-0.6
1,848,196	-		MIT1002_01671	0.89	-1.9
1,848,218	+				+0.5
1,848,231	+				+0.7
1,848,231	+				+0.2
1,848,239	-				+1.1
1,848,239	-				+1.4
1,848,239	-				-1.5
1,848,284	+				-2.4
1,848,291	+				-0.6
1,848,291	+				+0.6
1,848,291	+				+0.1
1,848,299	-				-0.9
1,848,313	+				-2.0
1,848,313	+				+0.1
1,848,313	+				-0.1
1,848,321	-				-0.9
1,848,420	+				+1.3
1,848,463	-				-1.1
1,848,479	-				-2.9
1,848,533	+				-0.0
1,848,541	-				+0.4
1,848,610	-		MIT1002_01672	0.15	-2.2
1,848,637	+		MIT1002_01672	0.18	+0.9
1,848,647	+		MIT1002_01672	0.18	-0.8
1,848,655	-		MIT1002_01672	0.19	+1.3
1,848,655	-		MIT1002_01672	0.19	+0.2
1,848,663	-		MIT1002_01672	0.20	-0.3
1,848,689	-		MIT1002_01672	0.22	+0.7
1,848,731	-		MIT1002_01672	0.25	+0.0
1,848,731	-		MIT1002_01672	0.25	+0.7
1,848,731	-		MIT1002_01672	0.25	+0.0
1,848,791	+		MIT1002_01672	0.30	-1.5
1,848,833	-		MIT1002_01672	0.33	+0.9
1,848,860	+		MIT1002_01672	0.36	-1.1
1,848,868	-		MIT1002_01672	0.36	+0.5
1,848,870	+		MIT1002_01672	0.37	-3.4
1,848,874	-		MIT1002_01672	0.37	-0.7
1,848,891	-		MIT1002_01672	0.38	-0.9
1,848,910	+		MIT1002_01672	0.40	+1.6
1,848,929	-		MIT1002_01672	0.41	-0.3
1,848,931	+		MIT1002_01672	0.41	+0.5
1,849,031	+		MIT1002_01672	0.50	+0.1
1,849,031	+		MIT1002_01672	0.50	+0.1
1,849,127	-		MIT1002_01672	0.57	+0.5
1,849,212	+		MIT1002_01672	0.64	+1.2
1,849,212	+		MIT1002_01672	0.64	-1.3
1,849,232	-		MIT1002_01672	0.66	+1.2
1,849,269	-		MIT1002_01672	0.69	+1.4
1,849,294	+		MIT1002_01672	0.71	-1.6
1,849,294	+		MIT1002_01672	0.71	+1.8
1,849,359	+		MIT1002_01672	0.76	+0.8
1,849,367	-		MIT1002_01672	0.77	-3.6
1,849,367	-		MIT1002_01672	0.77	-0.3
1,849,372	+		MIT1002_01672	0.77	-1.0
1,849,372	+		MIT1002_01672	0.77	+1.5
1,849,380	-		MIT1002_01672	0.78	+0.2
1,849,473	-		MIT1002_01672	0.86	+0.7
1,849,491	+		MIT1002_01672	0.87	+1.0
1,849,499	-		MIT1002_01672	0.88	+1.1
1,849,499	-		MIT1002_01672	0.88	-0.6
1,849,511	+		MIT1002_01672	0.89	+1.8
1,849,534	+				+0.2
1,849,542	-				-0.4
1,849,547	-				-1.5
1,849,587	+				+2.5
1,849,755	+				+1.2
1,849,762	+				-2.5
1,849,861	-		MIT1002_01673	0.18	-1.9
1,849,952	+		MIT1002_01673	0.25	-0.7
1,849,989	+		MIT1002_01673	0.28	+1.0
1,850,026	+		MIT1002_01673	0.31	+0.2
1,850,036	+		MIT1002_01673	0.32	-2.5
1,850,036	+		MIT1002_01673	0.32	-1.6
1,850,044	-		MIT1002_01673	0.33	-0.2
1,850,044	-		MIT1002_01673	0.33	-0.0
1,850,044	-		MIT1002_01673	0.33	+2.2
1,850,241	+		MIT1002_01673	0.49	-0.1
1,850,241	+		MIT1002_01673	0.49	-2.8
1,850,262	+		MIT1002_01673	0.50	+0.2
1,850,262	+		MIT1002_01673	0.50	+1.0
1,850,270	-		MIT1002_01673	0.51	-1.3
1,850,270	-		MIT1002_01673	0.51	-3.1
1,850,284	-		MIT1002_01673	0.52	+0.2
1,850,301	-		MIT1002_01673	0.53	+1.3
1,850,344	-		MIT1002_01673	0.57	+0.3
1,850,350	+		MIT1002_01673	0.57	-2.7
1,850,374	-		MIT1002_01673	0.59	-3.0
1,850,399	+		MIT1002_01673	0.61	-1.9
1,850,399	+		MIT1002_01673	0.61	-1.4
1,850,515	-		MIT1002_01673	0.71	-0.0
1,850,515	-		MIT1002_01673	0.71	-0.9
1,850,634	+		MIT1002_01673	0.80	-0.5