Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01554

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
1,705,674	+		MIT1002_01553	0.34	-0.8
1,705,686	+		MIT1002_01553	0.35	-0.6
1,705,849	+		MIT1002_01553	0.50	-1.5
1,705,882	+		MIT1002_01553	0.54	-1.5
1,705,882	+		MIT1002_01553	0.54	+0.8
1,705,882	+		MIT1002_01553	0.54	-1.3
1,705,890	-		MIT1002_01553	0.54	-2.0
1,705,890	-		MIT1002_01553	0.54	-0.2
1,705,890	-		MIT1002_01553	0.54	+0.1
1,705,890	-		MIT1002_01553	0.54	-0.1
1,705,890	-		MIT1002_01553	0.54	-1.3
1,705,890	-		MIT1002_01553	0.54	-0.1
1,705,890	-		MIT1002_01553	0.54	+0.4
1,705,910	-		MIT1002_01553	0.56	+1.1
1,706,004	-		MIT1002_01553	0.65	-0.7
1,706,011	-		MIT1002_01553	0.66	-1.0
1,706,026	-		MIT1002_01553	0.67	-1.2
1,706,070	+		MIT1002_01553	0.71	+0.1
1,706,077	+		MIT1002_01553	0.72	-0.1
1,706,078	-		MIT1002_01553	0.72	+1.7
1,706,137	-		MIT1002_01553	0.77	-0.8
1,706,250	+		MIT1002_01553	0.88	-1.6
1,706,516	-				+0.6
1,706,647	+				-2.8
1,706,822	-		MIT1002_01554	0.11	-0.3
1,706,868	+		MIT1002_01554	0.15	-1.8
1,706,876	+		MIT1002_01554	0.16	-4.1
1,706,878	+		MIT1002_01554	0.16	+2.0
1,706,886	-		MIT1002_01554	0.16	+0.5
1,707,065	+		MIT1002_01554	0.30	+1.4
1,707,094	-		MIT1002_01554	0.32	-0.1
1,707,118	-		MIT1002_01554	0.34	+0.0
1,707,126	+		MIT1002_01554	0.35	-0.4
1,707,172	-		MIT1002_01554	0.39	+1.2
1,707,172	-		MIT1002_01554	0.39	-0.9
1,707,172	-		MIT1002_01554	0.39	-3.0
1,707,178	+		MIT1002_01554	0.39	-0.2
1,707,178	+		MIT1002_01554	0.39	+2.7
1,707,204	-		MIT1002_01554	0.41	+0.1
1,707,252	+		MIT1002_01554	0.45	+0.6
1,707,261	-		MIT1002_01554	0.45	+1.1
1,707,272	+		MIT1002_01554	0.46	-1.1
1,707,280	-		MIT1002_01554	0.47	-2.0
1,707,280	-		MIT1002_01554	0.47	-1.1
1,707,280	-		MIT1002_01554	0.47	-0.4
1,707,280	-		MIT1002_01554	0.47	+0.7
1,707,280	-		MIT1002_01554	0.47	+1.4
1,707,316	-		MIT1002_01554	0.50	-0.9
1,707,571	+		MIT1002_01554	0.69	+0.5
1,707,571	+		MIT1002_01554	0.69	+0.4
1,707,579	-		MIT1002_01554	0.70	+0.9
1,707,587	-		MIT1002_01554	0.71	-0.3
1,707,589	+		MIT1002_01554	0.71	+0.4
1,707,656	-		MIT1002_01554	0.76	+0.5
1,707,669	+		MIT1002_01554	0.77	-1.5
1,707,669	+		MIT1002_01554	0.77	+1.0
1,707,669	+		MIT1002_01554	0.77	+1.1
1,707,669	+		MIT1002_01554	0.77	-0.4
1,707,669	+		MIT1002_01554	0.77	-1.5
1,707,669	+		MIT1002_01554	0.77	-0.2
1,707,669	+		MIT1002_01554	0.77	-0.8
1,707,669	+		MIT1002_01554	0.77	+1.8
1,707,669	+		MIT1002_01554	0.77	-1.6
1,707,677	-		MIT1002_01554	0.77	-3.5
1,707,677	-		MIT1002_01554	0.77	-0.1
1,707,708	-		MIT1002_01554	0.80	-2.1
1,707,727	+		MIT1002_01554	0.81	+0.1
1,707,727	+		MIT1002_01554	0.81	+0.4
1,707,735	-		MIT1002_01554	0.82	-1.8
1,707,770	+		MIT1002_01554	0.85	-0.4
1,707,788	+		MIT1002_01554	0.86	+0.4
1,707,801	-		MIT1002_01554	0.87	-0.6
1,707,830	+		MIT1002_01554	0.89	+1.1
1,707,830	+		MIT1002_01554	0.89	+0.9
1,707,846	-				-0.4
1,707,846	-				-1.5
1,707,846	-				-0.9
1,707,885	+				-1.8
1,708,001	+				-3.3
1,708,001	+				-1.2
1,708,087	+				-0.5
1,708,087	+				-0.9
1,708,087	+				+2.0
1,708,087	+				-1.9
1,708,087	+				-2.3
1,708,087	+				+0.9
1,708,087	+				-1.7
1,708,095	-				-1.3
1,708,095	-				-0.4
1,708,095	-				-3.1
1,708,095	-				+0.6
1,708,095	-				-0.9
1,708,099	+				-1.3
1,708,128	+				-1.8
1,708,136	+				-0.7
1,708,136	-				+1.7
1,708,215	+				-1.5
1,708,264	+				+2.0
1,708,273	-				+0.5
1,708,338	+				+3.0
1,708,338	+				+2.2
1,708,346	-				+0.9
1,708,346	-				+1.2
1,708,346	-				-1.1
1,708,346	-				-0.5
1,708,456	-		MIT1002_01555	0.21	-4.1
1,708,486	+		MIT1002_01555	0.28	+0.3
1,708,622	-		MIT1002_01555	0.60	-0.6
1,708,742	+		MIT1002_01555	0.88	-0.3
1,708,789	-				+1.1
1,708,817	+				-3.5
1,708,832	+				+2.7
1,708,958	+				+0.5
1,708,958	+				-0.6
1,708,958	+				-3.5