Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01386

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
1,536,114	-		MIT1002_01385	0.15	-0.6
1,536,125	-		MIT1002_01385	0.16	-0.7
1,536,152	-		MIT1002_01385	0.19	+0.1
1,536,154	+		MIT1002_01385	0.19	+1.2
1,536,154	+		MIT1002_01385	0.19	-0.8
1,536,154	+		MIT1002_01385	0.19	+0.0
1,536,154	+		MIT1002_01385	0.19	-1.7
1,536,154	+		MIT1002_01385	0.19	+0.5
1,536,154	+		MIT1002_01385	0.19	-0.0
1,536,154	+		MIT1002_01385	0.19	-1.4
1,536,162	-		MIT1002_01385	0.20	-0.1
1,536,162	-		MIT1002_01385	0.20	-0.3
1,536,162	-		MIT1002_01385	0.20	-0.8
1,536,162	-		MIT1002_01385	0.20	-2.9
1,536,244	-		MIT1002_01385	0.28	-2.0
1,536,267	-		MIT1002_01385	0.31	-2.8
1,536,276	+		MIT1002_01385	0.32	-0.3
1,536,333	+		MIT1002_01385	0.38	+0.5
1,536,378	+		MIT1002_01385	0.42	-1.8
1,536,411	+		MIT1002_01385	0.46	-4.1
1,536,419	-		MIT1002_01385	0.46	+0.0
1,536,437	-		MIT1002_01385	0.48	-1.2
1,536,470	-		MIT1002_01385	0.52	+0.7
1,536,606	-		MIT1002_01385	0.65	+0.6
1,536,616	-		MIT1002_01385	0.66	-2.7
1,536,633	+		MIT1002_01385	0.68	-2.1
1,536,665	+		MIT1002_01385	0.71	+0.1
1,536,673	-		MIT1002_01385	0.72	+1.2
1,536,673	-		MIT1002_01385	0.72	-1.2
1,536,700	+		MIT1002_01385	0.75	-1.7
1,536,700	+		MIT1002_01385	0.75	+0.3
1,536,700	+		MIT1002_01385	0.75	+1.1
1,536,708	-		MIT1002_01385	0.76	-4.2
1,536,708	-		MIT1002_01385	0.76	+0.9
1,536,708	-		MIT1002_01385	0.76	-0.6
1,536,708	-		MIT1002_01385	0.76	-2.8
1,536,708	-		MIT1002_01385	0.76	+0.4
1,536,797	+		MIT1002_01385	0.85	-0.4
1,536,802	+		MIT1002_01385	0.85	+2.0
1,536,805	-		MIT1002_01385	0.86	+0.2
1,536,807	+		MIT1002_01385	0.86	-0.0
1,536,815	-		MIT1002_01385	0.87	+1.1
1,536,830	+		MIT1002_01385	0.88	-1.7
1,536,837	+		MIT1002_01385	0.89	-0.1
1,536,837	+		MIT1002_01385	0.89	-0.9
1,536,845	-		MIT1002_01385	0.90	-1.1
1,536,863	-				+1.6
1,536,879	-				+0.9
1,536,979	-				-2.0
1,536,979	-				-1.3
1,537,045	+				+0.5
1,537,111	+		MIT1002_01386	0.16	-3.4
1,537,138	-		MIT1002_01386	0.19	-2.7
1,537,155	+		MIT1002_01386	0.20	+1.7
1,537,155	-		MIT1002_01386	0.20	-2.0
1,537,163	-		MIT1002_01386	0.21	-0.9
1,537,163	-		MIT1002_01386	0.21	-1.1
1,537,247	+		MIT1002_01386	0.30	-2.1
1,537,302	+		MIT1002_01386	0.36	-0.8
1,537,302	+		MIT1002_01386	0.36	-0.0
1,537,302	+		MIT1002_01386	0.36	+0.2
1,537,302	+		MIT1002_01386	0.36	+1.3
1,537,302	+		MIT1002_01386	0.36	-0.3
1,537,310	-		MIT1002_01386	0.37	+0.2
1,537,325	+		MIT1002_01386	0.38	+1.5
1,537,325	+		MIT1002_01386	0.38	-1.9
1,537,383	-		MIT1002_01386	0.44	-1.3
1,537,449	-		MIT1002_01386	0.51	-0.2
1,537,458	-		MIT1002_01386	0.52	-3.1
1,537,466	-		MIT1002_01386	0.53	-0.4
1,537,486	+		MIT1002_01386	0.55	-0.1
1,537,486	+		MIT1002_01386	0.55	-0.5
1,537,494	-		MIT1002_01386	0.56	-0.6
1,537,494	-		MIT1002_01386	0.56	-3.0
1,537,587	+		MIT1002_01386	0.66	-0.1
1,537,606	+		MIT1002_01386	0.68	+0.9
1,537,615	-		MIT1002_01386	0.69	-0.6
1,537,662	-		MIT1002_01386	0.74	-3.9
1,537,664	+		MIT1002_01386	0.74	-0.1
1,537,753	+		MIT1002_01386	0.83	+0.6
1,537,966	-				-0.2
1,537,993	+				-0.4
1,538,003	-				-1.9
1,538,081	+				+1.2
1,538,104	+				+0.1
1,538,240	-		MIT1002_01387	0.11	-1.3
1,538,262	+		MIT1002_01387	0.13	+0.6
1,538,263	+		MIT1002_01387	0.13	-0.5
1,538,263	+		MIT1002_01387	0.13	-2.9
1,538,294	+		MIT1002_01387	0.15	+0.5
1,538,302	-		MIT1002_01387	0.16	-0.3
1,538,347	-		MIT1002_01387	0.19	+2.1
1,538,368	+		MIT1002_01387	0.21	+2.0
1,538,376	-		MIT1002_01387	0.21	-1.4
1,538,483	+		MIT1002_01387	0.29	-0.2
1,538,544	-		MIT1002_01387	0.34	-2.4
1,538,544	-		MIT1002_01387	0.34	+0.1
1,538,558	-		MIT1002_01387	0.35	-2.7
1,538,694	+		MIT1002_01387	0.45	-2.7
1,538,702	-		MIT1002_01387	0.45	-2.9
1,538,751	+		MIT1002_01387	0.49	+0.4
1,538,756	+		MIT1002_01387	0.49	+1.7
1,538,756	+		MIT1002_01387	0.49	-3.2
1,538,756	+		MIT1002_01387	0.49	+0.9
1,538,756	+		MIT1002_01387	0.49	-0.4
1,538,756	+		MIT1002_01387	0.49	-2.4
1,538,764	-		MIT1002_01387	0.50	-0.2
1,538,766	+		MIT1002_01387	0.50	+1.3
1,538,772	-		MIT1002_01387	0.51	-2.5
1,538,773	+		MIT1002_01387	0.51	+0.5
1,538,774	-		MIT1002_01387	0.51	+0.3
1,538,834	+		MIT1002_01387	0.55	-4.5
1,538,834	+		MIT1002_01387	0.55	-2.6
1,538,842	-		MIT1002_01387	0.56	-1.7
1,538,842	-		MIT1002_01387	0.56	-0.1
1,538,842	-		MIT1002_01387	0.56	+1.9
1,538,862	-		MIT1002_01387	0.57	-1.6
1,538,862	-		MIT1002_01387	0.57	-0.6
1,538,882	+		MIT1002_01387	0.59	-0.4