Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01251

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01250 and MIT1002_01251 are separated by 196 nucleotidesMIT1002_01251 and MIT1002_01252 are separated by 34 nucleotidesMIT1002_01252 and MIT1002_01253 are separated by 1 nucleotides MIT1002_01250: MIT1002_01250 - Arginyl aminopeptidase, at 1,375,831 to 1,377,249 _01250 MIT1002_01251: MIT1002_01251 - Endonuclease III, at 1,377,446 to 1,378,168 _01251 MIT1002_01252: MIT1002_01252 - Electron transport complex protein RnfE, at 1,378,203 to 1,378,895 _01252 MIT1002_01253: MIT1002_01253 - Nitrogen fixation protein RnfG, at 1,378,897 to 1,379,781 _01253 Position (kb) 1377 1378 1379Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1376.549 kb on + strand, within MIT1002_01250at 1376.602 kb on - strand, within MIT1002_01250at 1376.610 kb on - strand, within MIT1002_01250at 1376.637 kb on + strand, within MIT1002_01250at 1376.645 kb on - strand, within MIT1002_01250at 1376.719 kb on + strand, within MIT1002_01250at 1376.719 kb on + strand, within MIT1002_01250at 1376.725 kb on + strand, within MIT1002_01250at 1376.865 kb on + strand, within MIT1002_01250at 1376.880 kb on + strand, within MIT1002_01250at 1376.885 kb on + strand, within MIT1002_01250at 1377.044 kb on - strand, within MIT1002_01250at 1377.089 kb on - strand, within MIT1002_01250at 1377.247 kb on + strandat 1377.302 kb on + strandat 1377.310 kb on - strandat 1377.315 kb on - strandat 1377.357 kb on - strandat 1377.635 kb on + strand, within MIT1002_01251at 1377.672 kb on - strand, within MIT1002_01251at 1377.672 kb on - strand, within MIT1002_01251at 1377.750 kb on - strand, within MIT1002_01251at 1377.834 kb on - strand, within MIT1002_01251at 1377.841 kb on + strand, within MIT1002_01251at 1377.873 kb on + strand, within MIT1002_01251at 1377.930 kb on + strand, within MIT1002_01251at 1377.940 kb on + strand, within MIT1002_01251at 1378.003 kb on + strand, within MIT1002_01251at 1378.003 kb on + strand, within MIT1002_01251at 1378.003 kb on + strand, within MIT1002_01251at 1378.003 kb on + strand, within MIT1002_01251at 1378.003 kb on + strand, within MIT1002_01251at 1378.005 kb on + strand, within MIT1002_01251at 1378.011 kb on - strand, within MIT1002_01251at 1378.011 kb on - strand, within MIT1002_01251at 1378.011 kb on - strand, within MIT1002_01251at 1378.011 kb on - strand, within MIT1002_01251at 1378.013 kb on - strand, within MIT1002_01251at 1378.918 kb on - strandat 1378.986 kb on - strand, within MIT1002_01253at 1378.986 kb on - strand, within MIT1002_01253at 1378.986 kb on - strand, within MIT1002_01253at 1378.986 kb on - strand, within MIT1002_01253at 1378.988 kb on - strand, within MIT1002_01253

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
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1,376,549 + MIT1002_01250 0.51 -0.1
1,376,602 - MIT1002_01250 0.54 +0.0
1,376,610 - MIT1002_01250 0.55 -4.0
1,376,637 + MIT1002_01250 0.57 -1.5
1,376,645 - MIT1002_01250 0.57 -0.5
1,376,719 + MIT1002_01250 0.63 +2.8
1,376,719 + MIT1002_01250 0.63 -0.9
1,376,725 + MIT1002_01250 0.63 -1.2
1,376,865 + MIT1002_01250 0.73 -1.2
1,376,880 + MIT1002_01250 0.74 +0.6
1,376,885 + MIT1002_01250 0.74 -1.2
1,377,044 - MIT1002_01250 0.85 +0.4
1,377,089 - MIT1002_01250 0.89 +2.3
1,377,247 + -0.5
1,377,302 + +0.4
1,377,310 - -0.2
1,377,315 - -0.6
1,377,357 - +0.1
1,377,635 + MIT1002_01251 0.26 -0.7
1,377,672 - MIT1002_01251 0.31 +1.0
1,377,672 - MIT1002_01251 0.31 +0.6
1,377,750 - MIT1002_01251 0.42 +2.0
1,377,834 - MIT1002_01251 0.54 -0.9
1,377,841 + MIT1002_01251 0.55 +0.4
1,377,873 + MIT1002_01251 0.59 +0.1
1,377,930 + MIT1002_01251 0.67 -0.3
1,377,940 + MIT1002_01251 0.68 +2.4
1,378,003 + MIT1002_01251 0.77 -2.0
1,378,003 + MIT1002_01251 0.77 +0.2
1,378,003 + MIT1002_01251 0.77 -0.3
1,378,003 + MIT1002_01251 0.77 +0.2
1,378,003 + MIT1002_01251 0.77 -0.4
1,378,005 + MIT1002_01251 0.77 -0.9
1,378,011 - MIT1002_01251 0.78 +2.5
1,378,011 - MIT1002_01251 0.78 +1.7
1,378,011 - MIT1002_01251 0.78 +0.2
1,378,011 - MIT1002_01251 0.78 +0.8
1,378,013 - MIT1002_01251 0.78 -0.4
1,378,918 - -0.9
1,378,986 - MIT1002_01253 0.10 +1.3
1,378,986 - MIT1002_01253 0.10 -3.5
1,378,986 - MIT1002_01253 0.10 -0.1
1,378,986 - MIT1002_01253 0.10 +1.4
1,378,988 - MIT1002_01253 0.10 -1.8

Or see this region's nucleotide sequence