Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00927

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
1,028,347	+				+1.8
1,028,381	+				+1.3
1,028,389	-				+1.3
1,028,389	-				+0.9
1,028,391	+				-1.6
1,028,399	-				+1.0
1,028,406	-				-0.0
1,028,434	+				+0.1
1,028,434	+				+0.4
1,028,566	+				-2.1
1,028,568	+				-0.4
1,028,578	+				+2.5
1,028,601	+				+0.7
1,028,606	-				-2.5
1,028,612	+				-0.6
1,028,622	+				-1.6
1,028,713	-		MIT1002_00926	0.21	-0.6
1,028,713	-		MIT1002_00926	0.21	-1.1
1,028,741	+		MIT1002_00926	0.24	+0.6
1,028,756	+		MIT1002_00926	0.26	+0.3
1,028,756	+		MIT1002_00926	0.26	-2.3
1,028,764	-		MIT1002_00926	0.27	-1.7
1,028,764	-		MIT1002_00926	0.27	-2.8
1,028,790	+		MIT1002_00926	0.30	+0.7
1,028,825	+		MIT1002_00926	0.35	+1.0
1,028,869	-		MIT1002_00926	0.40	-3.0
1,028,887	+		MIT1002_00926	0.42	-2.6
1,028,927	-		MIT1002_00926	0.47	+1.3
1,028,943	+		MIT1002_00926	0.49	+1.6
1,028,944	+		MIT1002_00926	0.49	+1.9
1,028,947	-		MIT1002_00926	0.50	+2.1
1,029,047	+		MIT1002_00926	0.62	-1.7
1,029,057	+		MIT1002_00926	0.63	+1.0
1,029,070	+		MIT1002_00926	0.65	+0.5
1,029,094	+		MIT1002_00926	0.68	-0.2
1,029,094	+		MIT1002_00926	0.68	-0.1
1,029,094	+		MIT1002_00926	0.68	+1.6
1,029,102	-		MIT1002_00926	0.69	-0.1
1,029,102	-		MIT1002_00926	0.69	+1.3
1,029,102	-		MIT1002_00926	0.69	+1.0
1,029,181	-		MIT1002_00926	0.79	-0.1
1,029,203	-		MIT1002_00926	0.81	-0.1
1,029,203	-		MIT1002_00926	0.81	+1.6
1,029,234	-		MIT1002_00926	0.85	-0.1
1,029,262	+		MIT1002_00926	0.89	+0.6
1,029,392	-				+0.7
1,029,392	-				+0.4
1,029,436	-				+0.1
1,029,436	-				+0.3
1,029,451	+				-1.7
1,029,574	-		MIT1002_00927	0.20	-0.1
1,029,681	+		MIT1002_00927	0.30	+2.4
1,029,878	-		MIT1002_00927	0.47	+0.5
1,029,934	+		MIT1002_00927	0.52	-1.1
1,029,942	-		MIT1002_00927	0.53	-0.6
1,029,952	-		MIT1002_00927	0.54	-2.1
1,030,015	-		MIT1002_00927	0.59	-0.4
1,030,065	+		MIT1002_00927	0.64	+1.4
1,030,065	+		MIT1002_00927	0.64	-2.3
1,030,073	-		MIT1002_00927	0.64	-1.6
1,030,073	-		MIT1002_00927	0.64	+2.2
1,030,073	-		MIT1002_00927	0.64	-1.3
1,030,073	-		MIT1002_00927	0.64	+0.7
1,030,092	-		MIT1002_00927	0.66	+0.0
1,030,113	+		MIT1002_00927	0.68	+0.2
1,030,121	-		MIT1002_00927	0.69	-1.5
1,030,129	+		MIT1002_00927	0.69	+0.9
1,030,129	+		MIT1002_00927	0.69	+0.9
1,030,129	+		MIT1002_00927	0.69	+1.5
1,030,129	+		MIT1002_00927	0.69	+0.0
1,030,137	-		MIT1002_00927	0.70	-0.1
1,030,137	-		MIT1002_00927	0.70	+0.3
1,030,139	+		MIT1002_00927	0.70	-2.6
1,030,139	+		MIT1002_00927	0.70	+1.6
1,030,214	-		MIT1002_00927	0.77	+1.6
1,030,244	-		MIT1002_00927	0.79	-4.2
1,030,246	+		MIT1002_00927	0.80	+1.5
1,030,254	-		MIT1002_00927	0.80	-1.8
1,030,254	-		MIT1002_00927	0.80	+0.0
1,030,254	-		MIT1002_00927	0.80	+1.0
1,030,342	+		MIT1002_00927	0.88	+0.6
1,030,343	+		MIT1002_00927	0.88	+0.1
1,030,343	+		MIT1002_00927	0.88	+2.0
1,030,343	+		MIT1002_00927	0.88	+0.9
1,030,343	+		MIT1002_00927	0.88	-1.1
1,030,350	-		MIT1002_00927	0.89	-1.1
1,030,426	+				-3.2
1,030,504	+				+0.2
1,030,704	+		MIT1002_00928	0.22	-0.1
1,030,748	+		MIT1002_00928	0.36	+0.2
1,030,748	+		MIT1002_00928	0.36	-1.1
1,030,748	+		MIT1002_00928	0.36	-0.5
1,030,756	-		MIT1002_00928	0.38	+0.8
1,030,756	-		MIT1002_00928	0.38	+0.4
1,030,882	-		MIT1002_00928	0.76	-1.3
1,030,939	+				-0.9
1,031,013	-				+1.8
1,031,050	-				+0.3
1,031,072	+				+1.3
1,031,079	+		MIT1002_00929	0.11	-3.9
1,031,126	+		MIT1002_00929	0.18	-1.7
1,031,176	-		MIT1002_00929	0.25	+0.1
1,031,190	+		MIT1002_00929	0.28	+2.5
1,031,198	-		MIT1002_00929	0.29	-1.1
1,031,203	-		MIT1002_00929	0.30	-1.8
1,031,237	+		MIT1002_00929	0.35	+1.6
1,031,256	+		MIT1002_00929	0.38	-0.7
1,031,305	-		MIT1002_00929	0.45	+0.9
1,031,377	+		MIT1002_00929	0.56	-1.9
1,031,377	+		MIT1002_00929	0.56	+0.1
1,031,385	-		MIT1002_00929	0.57	-3.5
1,031,385	-		MIT1002_00929	0.57	+0.4
1,031,437	+		MIT1002_00929	0.65	+2.8
1,031,437	+		MIT1002_00929	0.65	+0.9
1,031,439	+		MIT1002_00929	0.65	-2.1
1,031,445	-		MIT1002_00929	0.66	-2.4
1,031,456	+		MIT1002_00929	0.68	-0.2
1,031,464	-		MIT1002_00929	0.69	+1.1