Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00905

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
1,000,802	+		MIT1002_00904	0.43	-3.4
1,000,826	+		MIT1002_00904	0.45	-1.5
1,000,908	-		MIT1002_00904	0.50	-0.7
1,000,924	+		MIT1002_00904	0.50	+0.8
1,000,932	+		MIT1002_00904	0.51	+0.0
1,000,940	-		MIT1002_00904	0.51	-0.1
1,000,957	+		MIT1002_00904	0.52	+0.5
1,000,965	-		MIT1002_00904	0.53	+0.2
1,000,965	-		MIT1002_00904	0.53	+0.1
1,001,031	+		MIT1002_00904	0.57	-0.2
1,001,075	+		MIT1002_00904	0.59	+0.4
1,001,107	+		MIT1002_00904	0.61	-0.7
1,001,115	-		MIT1002_00904	0.61	+1.1
1,001,117	-		MIT1002_00904	0.62	+1.6
1,001,127	+		MIT1002_00904	0.62	-0.8
1,001,170	+		MIT1002_00904	0.65	+0.7
1,001,193	-		MIT1002_00904	0.66	-0.9
1,001,199	+		MIT1002_00904	0.66	-2.8
1,001,207	+		MIT1002_00904	0.67	-0.7
1,001,217	+		MIT1002_00904	0.67	+1.5
1,001,222	+		MIT1002_00904	0.68	+1.0
1,001,225	-		MIT1002_00904	0.68	-0.4
1,001,274	+		MIT1002_00904	0.71	-1.3
1,001,280	+		MIT1002_00904	0.71	-2.5
1,001,323	+		MIT1002_00904	0.73	-0.6
1,001,346	+		MIT1002_00904	0.75	-0.9
1,001,411	-		MIT1002_00904	0.78	+1.2
1,001,467	+		MIT1002_00904	0.82	-2.5
1,001,467	+		MIT1002_00904	0.82	-0.6
1,001,475	-		MIT1002_00904	0.82	+0.3
1,001,475	-		MIT1002_00904	0.82	-1.2
1,001,475	-		MIT1002_00904	0.82	+0.3
1,001,475	-		MIT1002_00904	0.82	+0.2
1,001,493	+		MIT1002_00904	0.83	-0.4
1,001,493	+		MIT1002_00904	0.83	-2.1
1,001,499	+		MIT1002_00904	0.84	+1.6
1,001,507	-		MIT1002_00904	0.84	+1.7
1,001,507	-		MIT1002_00904	0.84	+0.5
1,001,525	-		MIT1002_00904	0.85	+1.3
1,001,537	-		MIT1002_00904	0.86	-1.5
1,001,582	+		MIT1002_00904	0.88	+1.2
1,001,602	-		MIT1002_00904	0.89	-0.1
1,001,648	+				+0.3
1,001,648	+				-0.4
1,001,656	-				-0.5
1,001,675	+				+0.1
1,001,675	+				+0.6
1,001,683	-				+0.9
1,001,683	-				+1.8
1,001,693	-				-1.6
1,001,709	-				-1.0
1,001,722	-				-2.5
1,001,822	+				+1.9
1,001,830	-				-1.2
1,001,970	+		MIT1002_00905	0.11	+1.1
1,001,987	+		MIT1002_00905	0.13	-3.4
1,001,988	-		MIT1002_00905	0.13	-0.3
1,001,988	-		MIT1002_00905	0.13	+1.3
1,002,024	+		MIT1002_00905	0.15	-2.6
1,002,046	-		MIT1002_00905	0.16	-0.1
1,002,046	-		MIT1002_00905	0.16	+0.4
1,002,054	+		MIT1002_00905	0.17	+0.3
1,002,059	+		MIT1002_00905	0.17	+0.1
1,002,067	-		MIT1002_00905	0.18	+0.4
1,002,067	-		MIT1002_00905	0.18	-2.8
1,002,072	-		MIT1002_00905	0.18	+0.5
1,002,108	-		MIT1002_00905	0.20	+0.5
1,002,166	-		MIT1002_00905	0.24	-0.8
1,002,176	+		MIT1002_00905	0.24	-0.3
1,002,213	+		MIT1002_00905	0.27	+0.1
1,002,340	+		MIT1002_00905	0.35	-0.8
1,002,340	+		MIT1002_00905	0.35	-0.0
1,002,395	+		MIT1002_00905	0.38	-4.0
1,002,395	+		MIT1002_00905	0.38	-3.2
1,002,395	+		MIT1002_00905	0.38	-0.1
1,002,403	-		MIT1002_00905	0.39	+1.7
1,002,403	-		MIT1002_00905	0.39	-0.7
1,002,403	-		MIT1002_00905	0.39	+1.6
1,002,411	-		MIT1002_00905	0.39	+0.6
1,002,411	-		MIT1002_00905	0.39	+2.1
1,002,428	-		MIT1002_00905	0.40	+0.5
1,002,447	-		MIT1002_00905	0.42	-0.1
1,002,453	-		MIT1002_00905	0.42	-0.9
1,002,493	-		MIT1002_00905	0.45	+0.4
1,002,512	+		MIT1002_00905	0.46	+1.1
1,002,516	+		MIT1002_00905	0.46	-0.9
1,002,519	-		MIT1002_00905	0.46	+0.9
1,002,576	-		MIT1002_00905	0.50	-2.5
1,002,585	-		MIT1002_00905	0.50	-2.8
1,002,591	+		MIT1002_00905	0.51	+1.9
1,002,594	-		MIT1002_00905	0.51	+0.1
1,002,611	+		MIT1002_00905	0.52	-1.2
1,002,619	-		MIT1002_00905	0.52	-0.1
1,002,619	-		MIT1002_00905	0.52	-0.8
1,002,663	-		MIT1002_00905	0.55	+1.9
1,002,665	-		MIT1002_00905	0.55	-0.1
1,002,682	+		MIT1002_00905	0.56	-1.6
1,002,684	+		MIT1002_00905	0.57	+0.2
1,002,684	+		MIT1002_00905	0.57	+2.5
1,002,684	+		MIT1002_00905	0.57	+0.0
1,002,751	-		MIT1002_00905	0.61	+1.3
1,002,823	+		MIT1002_00905	0.65	-0.7
1,002,872	+		MIT1002_00905	0.68	+0.3
1,002,985	+		MIT1002_00905	0.76	+1.9
1,003,002	+		MIT1002_00905	0.77	+0.3
1,003,002	+		MIT1002_00905	0.77	+2.3
1,003,007	+		MIT1002_00905	0.77	+0.2
1,003,010	-		MIT1002_00905	0.77	+1.8
1,003,090	+		MIT1002_00905	0.82	+1.4
1,003,154	+		MIT1002_00905	0.86	+2.9
1,003,173	-		MIT1002_00905	0.87	+1.0
1,003,228	+				-0.7
1,003,253	-				+0.5
1,003,342	-				+0.9
1,003,352	+				+1.9
1,003,360	-				-1.3
1,003,360	-				-0.9
1,003,421	+				+1.7
1,003,421	+				+1.4
1,003,429	-				+0.7
1,003,467	-				-0.0
1,003,545	+		MIT1002_00906	0.19	-2.3
1,003,545	+		MIT1002_00906	0.19	+1.6
1,003,553	-		MIT1002_00906	0.20	+0.3
1,003,563	+		MIT1002_00906	0.22	-3.5
1,003,569	+		MIT1002_00906	0.23	-0.5
1,003,593	-		MIT1002_00906	0.27	+0.7
1,003,615	+		MIT1002_00906	0.31	-1.1
1,003,685	-		MIT1002_00906	0.44	-3.7
1,003,686	-		MIT1002_00906	0.44	-0.9
1,003,686	-		MIT1002_00906	0.44	+1.2
1,003,738	+		MIT1002_00906	0.53	-0.1
1,003,746	-		MIT1002_00906	0.55	+1.7
1,003,837	-		MIT1002_00906	0.71	-1.5
1,003,941	-		MIT1002_00906	0.90	+0.1
1,004,080	+				+0.2
1,004,082	+				+0.2
1,004,082	+				+1.2
1,004,088	+				-1.1
1,004,096	-				+0.6
1,004,137	+				+1.5
1,004,159	-				+0.5
1,004,176	-				+1.5
1,004,194	-		MIT1002_00907	0.11	+0.4
1,004,215	-		MIT1002_00907	0.14	-0.7
1,004,261	+		MIT1002_00907	0.20	+0.3
1,004,261	+		MIT1002_00907	0.20	-0.4
1,004,271	-		MIT1002_00907	0.21	+1.6
1,004,294	-		MIT1002_00907	0.24	+0.8
1,004,310	+		MIT1002_00907	0.26	-0.5
1,004,318	-		MIT1002_00907	0.27	+0.8
1,004,329	-		MIT1002_00907	0.29	+0.1
1,004,371	+		MIT1002_00907	0.34	-2.7