Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00878 and MIT1002_00879 are separated by 96 nucleotides MIT1002_00879 and MIT1002_00880 are separated by 134 nucleotides MIT1002_00880 and MIT1002_00881 are separated by 86 nucleotides
MIT1002_00878: MIT1002_00878 - Sulfate permease CysP, at 970,753 to 972,024
_00878
MIT1002_00879: MIT1002_00879 - Universal stress protein E, at 972,121 to 973,098
_00879
MIT1002_00880: MIT1002_00880 - hypothetical protein, at 973,233 to 973,346
_00880
MIT1002_00881: MIT1002_00881 - Morphology and auto-aggregation control protein, at 973,433 to 974,341
_00881
Position (kb) 972
973
974 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 972.019 kb on + strand at 972.019 kb on + strand at 972.029 kb on - strand at 972.050 kb on - strand at 972.140 kb on - strand at 972.154 kb on + strand at 972.164 kb on - strand at 972.176 kb on + strand at 972.184 kb on - strand at 972.208 kb on + strand at 972.212 kb on + strand at 972.217 kb on + strand at 972.231 kb on + strand, within MIT1002_00879 at 972.231 kb on + strand, within MIT1002_00879 at 972.232 kb on + strand, within MIT1002_00879 at 972.248 kb on + strand, within MIT1002_00879 at 972.346 kb on + strand, within MIT1002_00879 at 972.354 kb on - strand, within MIT1002_00879 at 972.456 kb on - strand, within MIT1002_00879 at 972.470 kb on - strand, within MIT1002_00879 at 972.515 kb on + strand, within MIT1002_00879 at 972.515 kb on + strand, within MIT1002_00879 at 972.517 kb on + strand, within MIT1002_00879 at 972.523 kb on - strand, within MIT1002_00879 at 972.523 kb on - strand, within MIT1002_00879 at 972.530 kb on - strand, within MIT1002_00879 at 972.597 kb on - strand, within MIT1002_00879 at 972.627 kb on - strand, within MIT1002_00879 at 972.664 kb on - strand, within MIT1002_00879 at 972.722 kb on - strand, within MIT1002_00879 at 972.722 kb on - strand, within MIT1002_00879 at 972.745 kb on + strand, within MIT1002_00879 at 972.745 kb on + strand, within MIT1002_00879 at 972.750 kb on + strand, within MIT1002_00879 at 972.819 kb on + strand, within MIT1002_00879 at 972.840 kb on + strand, within MIT1002_00879 at 972.848 kb on - strand, within MIT1002_00879 at 972.894 kb on - strand, within MIT1002_00879 at 972.894 kb on - strand, within MIT1002_00879 at 973.023 kb on + strand at 973.025 kb on + strand at 973.033 kb on - strand at 973.060 kb on + strand at 973.068 kb on - strand at 973.136 kb on + strand at 973.441 kb on + strand at 973.448 kb on - strand at 973.448 kb on - strand at 973.500 kb on + strand at 973.500 kb on + strand at 973.513 kb on - strand at 973.518 kb on - strand at 973.545 kb on - strand, within MIT1002_00881 at 973.547 kb on + strand, within MIT1002_00881 at 973.595 kb on + strand, within MIT1002_00881 at 973.595 kb on + strand, within MIT1002_00881 at 973.595 kb on + strand, within MIT1002_00881 at 973.664 kb on + strand, within MIT1002_00881 at 973.683 kb on - strand, within MIT1002_00881 at 973.697 kb on + strand, within MIT1002_00881 at 973.716 kb on + strand, within MIT1002_00881 at 973.868 kb on - strand, within MIT1002_00881 at 973.868 kb on - strand, within MIT1002_00881 at 973.910 kb on - strand, within MIT1002_00881 at 973.918 kb on - strand, within MIT1002_00881 at 973.928 kb on + strand, within MIT1002_00881 at 973.931 kb on - strand, within MIT1002_00881 at 973.936 kb on - strand, within MIT1002_00881 at 973.961 kb on + strand, within MIT1002_00881 at 973.972 kb on + strand, within MIT1002_00881 at 973.972 kb on + strand, within MIT1002_00881 at 974.035 kb on + strand, within MIT1002_00881 at 974.035 kb on + strand, within MIT1002_00881 at 974.035 kb on + strand, within MIT1002_00881 at 974.035 kb on + strand, within MIT1002_00881 at 974.037 kb on + strand, within MIT1002_00881 at 974.043 kb on - strand, within MIT1002_00881 at 974.043 kb on - strand, within MIT1002_00881 at 974.043 kb on - strand, within MIT1002_00881 at 974.043 kb on - strand, within MIT1002_00881 at 974.069 kb on + strand, within MIT1002_00881 at 974.075 kb on - strand, within MIT1002_00881
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 972,019 + -1.2 972,019 + -0.1 972,029 - +1.2 972,050 - +1.1 972,140 - -3.8 972,154 + +0.4 972,164 - +0.8 972,176 + +1.1 972,184 - -2.8 972,208 + +3.4 972,212 + -0.9 972,217 + +2.4 972,231 + MIT1002_00879 0.11 -0.2 972,231 + MIT1002_00879 0.11 +1.6 972,232 + MIT1002_00879 0.11 +0.4 972,248 + MIT1002_00879 0.13 -1.8 972,346 + MIT1002_00879 0.23 +0.9 972,354 - MIT1002_00879 0.24 +1.9 972,456 - MIT1002_00879 0.34 +1.4 972,470 - MIT1002_00879 0.36 +0.6 972,515 + MIT1002_00879 0.40 +0.1 972,515 + MIT1002_00879 0.40 -2.3 972,517 + MIT1002_00879 0.40 -0.5 972,523 - MIT1002_00879 0.41 -2.1 972,523 - MIT1002_00879 0.41 +0.8 972,530 - MIT1002_00879 0.42 -0.5 972,597 - MIT1002_00879 0.49 +2.4 972,627 - MIT1002_00879 0.52 +2.1 972,664 - MIT1002_00879 0.56 +1.5 972,722 - MIT1002_00879 0.61 -0.8 972,722 - MIT1002_00879 0.61 -0.7 972,745 + MIT1002_00879 0.64 +0.6 972,745 + MIT1002_00879 0.64 -2.2 972,750 + MIT1002_00879 0.64 -2.2 972,819 + MIT1002_00879 0.71 +0.6 972,840 + MIT1002_00879 0.74 +0.4 972,848 - MIT1002_00879 0.74 -0.6 972,894 - MIT1002_00879 0.79 +0.4 972,894 - MIT1002_00879 0.79 -0.2 973,023 + -0.9 973,025 + -1.5 973,033 - +1.3 973,060 + -3.3 973,068 - +0.1 973,136 + -0.4 973,441 + -2.6 973,448 - -3.5 973,448 - -1.9 973,500 + -0.1 973,500 + +2.8 973,513 - -1.8 973,518 - -2.0 973,545 - MIT1002_00881 0.12 -3.1 973,547 + MIT1002_00881 0.13 +1.3 973,595 + MIT1002_00881 0.18 -3.8 973,595 + MIT1002_00881 0.18 -1.8 973,595 + MIT1002_00881 0.18 +0.7 973,664 + MIT1002_00881 0.25 +0.2 973,683 - MIT1002_00881 0.28 -2.5 973,697 + MIT1002_00881 0.29 -2.5 973,716 + MIT1002_00881 0.31 -0.1 973,868 - MIT1002_00881 0.48 +1.3 973,868 - MIT1002_00881 0.48 -0.1 973,910 - MIT1002_00881 0.52 -0.3 973,918 - MIT1002_00881 0.53 +0.7 973,928 + MIT1002_00881 0.54 -0.9 973,931 - MIT1002_00881 0.55 +0.1 973,936 - MIT1002_00881 0.55 +1.0 973,961 + MIT1002_00881 0.58 -1.2 973,972 + MIT1002_00881 0.59 -0.2 973,972 + MIT1002_00881 0.59 +2.3 974,035 + MIT1002_00881 0.66 -2.0 974,035 + MIT1002_00881 0.66 -1.3 974,035 + MIT1002_00881 0.66 -0.1 974,035 + MIT1002_00881 0.66 -3.4 974,037 + MIT1002_00881 0.66 -0.7 974,043 - MIT1002_00881 0.67 +0.6 974,043 - MIT1002_00881 0.67 -3.5 974,043 - MIT1002_00881 0.67 -3.2 974,043 - MIT1002_00881 0.67 +0.0 974,069 + MIT1002_00881 0.70 -0.7 974,075 - MIT1002_00881 0.71 -0.9
Or see this region's nucleotide sequence