Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00858 and MIT1002_00859 are separated by 72 nucleotides MIT1002_00859 and MIT1002_00860 are separated by 240 nucleotides MIT1002_00860 and MIT1002_00861 are separated by 427 nucleotides
MIT1002_00858: MIT1002_00858 - Exonuclease, at 942,543 to 943,040
_00858
MIT1002_00859: MIT1002_00859 - hypothetical protein, at 943,113 to 943,583
_00859
MIT1002_00860: MIT1002_00860 - S-adenosylmethionine synthase, at 943,824 to 944,969
_00860
MIT1002_00861: MIT1002_00861 - Transketolase 1, at 945,397 to 947,388
_00861
Position (kb) 943
944
945 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 942.837 kb on - strand, within MIT1002_00858 at 942.853 kb on - strand, within MIT1002_00858 at 942.880 kb on + strand, within MIT1002_00858 at 942.928 kb on + strand, within MIT1002_00858 at 943.100 kb on + strand at 943.103 kb on - strand at 943.194 kb on + strand, within MIT1002_00859 at 943.194 kb on + strand, within MIT1002_00859 at 943.202 kb on - strand, within MIT1002_00859 at 943.202 kb on - strand, within MIT1002_00859 at 943.224 kb on + strand, within MIT1002_00859 at 943.312 kb on + strand, within MIT1002_00859 at 943.312 kb on + strand, within MIT1002_00859 at 943.312 kb on + strand, within MIT1002_00859 at 943.312 kb on + strand, within MIT1002_00859 at 943.312 kb on + strand, within MIT1002_00859 at 943.336 kb on + strand, within MIT1002_00859 at 943.344 kb on - strand, within MIT1002_00859 at 943.367 kb on - strand, within MIT1002_00859 at 943.381 kb on + strand, within MIT1002_00859 at 943.387 kb on + strand, within MIT1002_00859 at 943.387 kb on + strand, within MIT1002_00859 at 943.481 kb on + strand, within MIT1002_00859 at 943.481 kb on + strand, within MIT1002_00859 at 943.481 kb on + strand, within MIT1002_00859 at 943.486 kb on + strand, within MIT1002_00859 at 943.486 kb on + strand, within MIT1002_00859 at 943.489 kb on - strand, within MIT1002_00859 at 943.494 kb on - strand, within MIT1002_00859 at 943.494 kb on - strand, within MIT1002_00859 at 943.494 kb on - strand, within MIT1002_00859 at 943.530 kb on - strand, within MIT1002_00859 at 943.599 kb on + strand at 943.636 kb on - strand at 943.844 kb on + strand at 945.089 kb on + strand at 945.089 kb on + strand at 945.103 kb on + strand at 945.103 kb on + strand at 945.105 kb on - strand at 945.111 kb on - strand at 945.159 kb on + strand at 945.196 kb on + strand at 945.211 kb on - strand at 945.249 kb on + strand at 945.272 kb on + strand at 945.277 kb on + strand at 945.277 kb on + strand at 945.317 kb on + strand at 945.334 kb on + strand at 945.343 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 942,837 - MIT1002_00858 0.59 -0.4 942,853 - MIT1002_00858 0.62 +0.7 942,880 + MIT1002_00858 0.68 +1.0 942,928 + MIT1002_00858 0.77 +1.1 943,100 + +0.9 943,103 - -2.4 943,194 + MIT1002_00859 0.17 -1.9 943,194 + MIT1002_00859 0.17 -2.1 943,202 - MIT1002_00859 0.19 -2.3 943,202 - MIT1002_00859 0.19 -1.4 943,224 + MIT1002_00859 0.24 -0.9 943,312 + MIT1002_00859 0.42 +1.5 943,312 + MIT1002_00859 0.42 -1.8 943,312 + MIT1002_00859 0.42 +0.5 943,312 + MIT1002_00859 0.42 -3.1 943,312 + MIT1002_00859 0.42 -1.8 943,336 + MIT1002_00859 0.47 +0.0 943,344 - MIT1002_00859 0.49 +0.8 943,367 - MIT1002_00859 0.54 -0.1 943,381 + MIT1002_00859 0.57 -0.0 943,387 + MIT1002_00859 0.58 -1.2 943,387 + MIT1002_00859 0.58 +1.4 943,481 + MIT1002_00859 0.78 -0.7 943,481 + MIT1002_00859 0.78 -0.5 943,481 + MIT1002_00859 0.78 +0.7 943,486 + MIT1002_00859 0.79 +0.8 943,486 + MIT1002_00859 0.79 +0.2 943,489 - MIT1002_00859 0.80 -0.1 943,494 - MIT1002_00859 0.81 -0.1 943,494 - MIT1002_00859 0.81 +1.1 943,494 - MIT1002_00859 0.81 -0.5 943,530 - MIT1002_00859 0.89 -1.5 943,599 + +0.9 943,636 - -0.8 943,844 + +0.4 945,089 + -0.2 945,089 + +1.4 945,103 + +3.1 945,103 + +1.2 945,105 - +1.3 945,111 - +1.5 945,159 + -0.0 945,196 + +0.3 945,211 - -0.4 945,249 + -2.5 945,272 + +0.2 945,277 + +0.9 945,277 + -4.2 945,317 + -1.4 945,334 + -2.0 945,343 + -3.5
Or see this region's nucleotide sequence